Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0375601 Rosa chinensis HOM05D003568 ORTHO05D004104 3.9e-34 147.5 72 100.0
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 9.4e-12 73.2 56 71.4
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 9.4e-12 73.2 56 71.4
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 9.4e-12 73.2 56 71.4
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 9.4e-12 73.2 56 71.4
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 1.2e-11 72.8 56 71.4
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 1.6e-11 72.4 56 69.6
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.6e-11 72.4 56 69.6
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 1.6e-11 72.4 56 69.6
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 1.6e-11 72.4 56 69.6
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 2.1e-11 72.0 56 69.6
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 2.1e-11 72.0 56 69.6
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 2.1e-11 72.0 56 69.6
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 2.1e-11 72.0 56 69.6
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 2.1e-11 72.0 56 69.6
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 2.1e-11 72.0 56 69.6
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 2.1e-11 72.0 56 69.6
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 2.7e-11 71.6 55 70.9
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.7e-11 71.6 55 70.9
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.7e-11 71.6 55 70.9
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.7e-11 71.6 55 70.9
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.7e-11 71.6 55 70.9
FAN10G2647 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.7e-11 71.6 55 70.9
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 2.7e-11 71.6 55 70.9
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 2.7e-11 71.6 56 69.6
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 3.6e-11 71.2 56 67.9
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 3.6e-11 71.2 56 67.9
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 3.6e-11 71.2 56 67.9
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 4.6e-11 70.9 55 67.3
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 4.6e-11 70.9 55 67.3
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 4.6e-11 70.9 56 67.9
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 4.6e-11 70.9 56 67.9
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 4.6e-11 70.9 56 67.9
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 4.6e-11 70.9 56 67.9
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 4.6e-11 70.9 56 67.9
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 6.1e-11 70.5 55 69.1
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 6.1e-11 70.5 56 67.9
Hma1.2p1_0335F.1_g128910 Hydrangea macrophylla HOM05D003568 ORTHO05D004104 6.1e-11 70.5 55 69.1
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 6.1e-11 70.5 55 69.1
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 6.1e-11 70.5 56 67.9
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 6.1e-11 70.5 56 67.9
TAR374G0165 Trochodendron aralioides HOM05D003568 ORTHO05D004104 6.1e-11 70.5 56 67.9
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 7.9e-11 70.1 55 67.3
Dinv09574 Davidia involucrata HOM05D003568 ORTHO05D004104 1.0e-10 69.7 56 66.1
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 1.0e-10 69.7 55 69.1
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 1.0e-10 69.7 55 67.3
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 1.0e-10 69.7 56 67.9
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 1.0e-10 69.7 56 67.9
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 1.0e-10 69.7 55 67.3
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 1.4e-10 69.3 56 66.1
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 1.4e-10 69.3 55 69.1
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 1.4e-10 69.3 56 67.9
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 1.4e-10 69.3 56 67.9
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 1.8e-10 68.9 55 65.5
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 1.8e-10 68.9 56 66.1
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 2.3e-10 68.6 55 65.5
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 2.3e-10 68.6 55 67.3
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 3.0e-10 68.2 55 67.3
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 3.0e-10 68.2 55 67.3
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 3.0e-10 68.2 55 67.3
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 3.9e-10 67.8 55 65.5
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 5.1e-10 67.4 56 66.1
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 6.7e-10 67.0 55 65.5
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 6.7e-10 67.0 55 65.5
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 6.7e-10 67.0 56 62.5
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 6.7e-10 67.0 55 65.5
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 8.8e-10 66.6 56 62.5
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 8.8e-10 66.6 56 64.3
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 8.8e-10 66.6 55 61.8
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 8.8e-10 66.6 55 61.8
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 8.8e-10 66.6 55 65.5
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 8.8e-10 66.6 55 65.5
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 1.1e-09 66.2 56 64.3
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 1.1e-09 66.2 56 62.5
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 1.1e-09 66.2 56 62.5
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 1.1e-09 66.2 56 62.5
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 1.5e-09 65.9 56 64.3
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 3.3e-09 64.7 56 64.3
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 3.3e-09 64.7 55 63.6
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 4.3e-09 64.3 55 63.6
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 5.7e-09 63.9 56 64.3
MBI03_g34513_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 5.7e-09 63.9 56 60.7
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 7.4e-09 63.5 67 58.2
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 7.4e-09 63.5 55 61.8
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 9.7e-09 63.2 55 61.8
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 9.7e-09 63.2 56 62.5
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 9.7e-09 63.2 55 61.8
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 9.7e-09 63.2 55 61.8
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 9.7e-09 63.2 55 61.8
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 9.7e-09 63.2 55 58.2
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 9.7e-09 63.2 56 60.7
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 1.7e-08 62.4 55 58.2
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 1.7e-08 62.4 55 58.2
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 1.7e-08 62.4 55 58.2
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 1.7e-08 62.4 55 58.2
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 1.7e-08 62.4 56 62.5
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 1.7e-08 62.4 55 58.2
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.7e-08 62.4 55 61.8
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 1.7e-08 62.4 55 58.2
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 2.2e-08 62.0 55 61.8
Nitab4.5_0004323g0080 Nicotiana tabacum HOM05D003568 ORTHO05D004104 2.2e-08 62.0 55 61.8
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 2.2e-08 62.0 55 60.0
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 2.2e-08 62.0 55 60.0
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 2.8e-08 61.6 55 61.8
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 3.7e-08 61.2 55 60.0
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 3.7e-08 61.2 55 60.0
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 4.8e-08 60.8 55 56.4
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 4.8e-08 60.8 55 56.4
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 4.8e-08 60.8 55 56.4
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 4.8e-08 60.8 55 56.4
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 4.8e-08 60.8 55 60.0
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 4.8e-08 60.8 55 61.8
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 4.8e-08 60.8 55 61.8
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 4.8e-08 60.8 55 61.8
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 4.8e-08 60.8 55 60.0
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 6.3e-08 60.5 55 61.8
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 8.2e-08 60.1 56 58.9
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 8.2e-08 60.1 56 58.9
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 8.2e-08 60.1 56 60.7
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 8.2e-08 60.1 55 58.2
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 8.2e-08 60.1 49 61.2
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 1.1e-07 59.7 55 56.4
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 1.1e-07 59.7 55 56.4
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 1.1e-07 59.7 55 56.4
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 1.1e-07 59.7 55 56.4
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 1.4e-07 59.3 55 58.2
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 1.4e-07 59.3 55 58.2
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 1.8e-07 58.9 55 58.2
Solyc10g019140.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.8e-07 58.9 55 58.2
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 1.8e-07 58.9 55 56.4
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 2.4e-07 58.5 56 55.4
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 2.4e-07 58.5 54 59.3
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 3.1e-07 58.2 54 55.6
Sopen10g009060 Solanum pennellii HOM05D003568 ORTHO05D004104 3.1e-07 58.2 55 58.2
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 4.1e-07 57.8 56 57.1
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 5.3e-07 57.4 55 54.5
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 9.1e-07 56.6 54 57.4
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 9.1e-07 56.6 54 57.4
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 4.5e-06 54.3 55 49.1
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 5.9e-06 53.9 55 50.9


User provided reference genes

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