Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 4.4e-166 587.8 282 100.0
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 2.3e-122 442.6 224 89.3
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 3.0e-122 442.2 231 87.4
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.6e-120 436.4 231 86.6
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 5.1e-114 414.8 226 82.7
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.1e-113 413.7 224 85.3
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 4.3e-113 411.8 226 82.7
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 6.9e-111 404.4 222 82.4
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 2.6e-102 375.9 240 75.4
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 2.9e-101 372.5 222 74.3
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 3.6e-99 365.5 222 73.4
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 6.1e-99 364.8 188 88.3
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 5.2e-98 361.7 188 87.2
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 1.1e-97 360.5 217 72.4
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 2.0e-97 359.8 223 71.3
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 3.3e-97 359.0 228 71.9
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 1.3e-93 347.1 228 68.4
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 3.8e-93 345.5 219 69.9
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 6.5e-93 344.7 228 70.6
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 6.5e-93 344.7 223 69.5
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 8.5e-93 344.4 262 61.1
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 4.2e-92 342.0 222 68.9
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 7.2e-92 341.3 225 68.4
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 7.2e-92 341.3 219 70.3
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 9.4e-92 340.9 219 71.2
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 1.2e-91 340.5 225 68.0
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 2.1e-91 339.7 225 69.3
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 3.6e-91 339.0 224 68.3
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 4.7e-91 338.6 217 70.0
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 8.0e-91 337.8 224 67.9
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 8.0e-91 337.8 218 69.7
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 1.0e-90 337.4 219 70.3
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 1.4e-90 337.0 225 70.7
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 6.8e-90 334.7 220 69.1
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 6.8e-90 334.7 228 67.1
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 8.8e-90 334.3 222 66.2
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 2.0e-89 333.2 231 64.1
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 2.6e-89 332.8 220 69.1
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 3.4e-89 332.4 224 67.9
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 5.7e-89 331.6 217 68.7
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 7.5e-89 331.3 224 67.4
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 9.8e-89 330.9 224 67.4
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 9.8e-89 330.9 224 65.2
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 1.7e-88 330.1 214 69.2
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 2.2e-88 329.7 218 69.3
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 2.8e-88 329.3 221 66.1
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 3.7e-88 328.9 224 68.3
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 3.7e-88 328.9 218 67.4
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 8.3e-88 327.8 213 67.1
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 8.3e-88 327.8 225 66.7
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 1.4e-87 327.0 218 67.4
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 1.4e-87 327.0 218 67.4
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 1.8e-87 326.6 225 64.9
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 1.8e-87 326.6 229 65.9
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 1.8e-87 326.6 218 66.5
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 2.4e-87 326.2 217 68.2
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 3.1e-87 325.9 225 65.3
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 2.0e-86 323.2 218 66.5
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 1.7e-85 320.1 229 65.9
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 3.8e-85 318.9 232 64.2
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 3.8e-85 318.9 232 64.2
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 1.9e-84 316.6 219 64.8
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 2.5e-84 316.2 214 65.4
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 4.2e-84 315.5 215 65.6
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 4.2e-84 315.5 219 64.4
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 9.4e-84 314.3 213 65.3
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 2.7e-83 312.8 223 65.0
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 4.7e-83 312.0 219 66.2
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 4.7e-83 312.0 224 64.7
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 8.0e-83 311.2 223 64.6
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 8.0e-83 311.2 220 64.1
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 5.2e-82 308.5 222 64.0
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 7.5e-81 304.7 214 65.9
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 9.8e-81 304.3 190 72.6
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 3.7e-80 302.4 214 65.4
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 4.9e-80 302.0 291 53.6
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 5.4e-79 298.5 244 59.4
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 5.4e-79 298.5 219 62.6
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 9.1e-79 297.7 193 69.4
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 5.9e-78 295.0 216 63.0
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 5.0e-77 292.0 226 59.7
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 8.0e-75 284.6 185 70.3
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 8.0e-75 284.6 270 53.0
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 3.0e-74 282.7 194 65.5
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 3.0e-74 282.7 192 67.7
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 3.0e-74 282.7 185 69.2
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 2.0e-73 280.0 192 66.7
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 4.4e-73 278.9 182 69.8
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 7.5e-73 278.1 188 68.1
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 7.5e-73 278.1 213 60.1
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 1.3e-72 277.3 184 67.9
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 1.1e-71 274.2 188 66.5
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 1.4e-71 273.9 202 63.9
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 3.2e-71 272.7 184 66.8
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 3.2e-71 272.7 218 62.4
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 7.0e-71 271.6 199 64.8
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 1.2e-70 270.8 184 65.8
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 1.0e-69 267.7 190 64.7
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 2.3e-69 266.5 187 66.3
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 2.3e-69 266.5 187 66.3
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 5.6e-68 261.9 185 65.4
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 1.7e-64 250.4 219 56.2
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 3.7e-64 249.2 187 59.9
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 4.1e-63 245.7 212 54.7
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 5.4e-63 245.4 192 60.4
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 3.5e-62 242.7 186 58.6
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 4.6e-62 242.3 221 54.8
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 4.6e-62 242.3 221 54.8
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 8.6e-61 238.0 216 56.0
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 4.0e-58 229.2 193 54.4
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 5.1e-53 212.2 216 44.0
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 3.6e-51 206.1 159 62.3
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 2.6e-49 199.9 137 61.3
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 3.7e-48 196.1 131 64.9
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 2.8e-35 153.3 84 70.2
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 3.4e-33 146.4 72 76.4
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 9.3e-15 85.1 184 34.2
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 6.5e-08 62.4 62 40.3


User provided reference genes

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