Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0375161 Rosa chinensis HOM05D000337 ORTHO05D342761 3.3e-46 188.0 90 100.0
FAN03G0263 Fragaria x ananassa HOM05D000337 ORTHO05D005067 3.3e-22 108.2 69 76.8
FAN03G2596 Fragaria x ananassa HOM05D000337 ORTHO05D005067 3.3e-22 108.2 69 76.8
FAN10G0393 Fragaria x ananassa HOM05D000337 ORTHO05D005067 3.3e-22 108.2 69 76.8
FAN06G1705 Fragaria x ananassa HOM05D000504 ORTHO05D000403 1.2e-21 106.3 69 75.4
FAN06G4803 Fragaria x ananassa HOM05D000504 ORTHO05D000403 2.1e-21 105.5 69 75.4
FAN01G0639 Fragaria x ananassa HOM05D000504 ORTHO05D000403 5.2e-20 100.9 69 72.5
Lj2g0001055 Lotus japonicus HOM05D000337 ORTHO05D005067 1.7e-18 95.9 73 60.3
Dinv28532 Davidia involucrata HOM05D000337 ORTHO05D005067 1.4e-17 92.8 73 60.3
TPR.G10658 Trifolium pratense HOM05D000337 ORTHO05D005067 5.4e-17 90.9 83 53.0
RcHm_v2.0_Chr1g0375151 Rosa chinensis HOM05D000337 ORTHO05D005067 7.1e-17 90.5 73 58.9
Rhsim03G0171500 Rhododendron simsii HOM05D000337 ORTHO05D005067 1.2e-16 89.7 73 56.2
arahy.Tifrunner.gnm1.ann1.B3RUP4 Arachis hypogaea HOM05D000337 ORTHO05D005067 1.6e-16 89.4 67 58.2
Eucgr.K00144 Eucalyptus grandis HOM05D000337 ORTHO05D005067 1.6e-16 89.4 73 57.5
Medtr6g061710 Medicago truncatula HOM05D000337 ORTHO05D005067 1.6e-16 89.4 73 56.2
COL.COLO4_14182 Corchorus olitorius HOM05D000337 ORTHO05D005067 2.1e-16 89.0 73 56.2
Haze_13823 Corylus avellana HOM05D000337 ORTHO05D005067 2.1e-16 89.0 73 56.2
CDE09G0813 Ceratophyllum demersum HOM05D000363 ORTHO05D005067 2.7e-16 88.6 73 56.2
Psat1g111400 Pisum sativum HOM05D000337 ORTHO05D005067 2.7e-16 88.6 73 54.8
Duzib084G0306 Durio zibethinus HOM05D000337 ORTHO05D005067 3.5e-16 88.2 72 55.6
MD01G1185900 Malus domestica HOM05D000337 ORTHO05D005067 3.5e-16 88.2 73 56.2
QL12p039478 Quercus lobata HOM05D000337 ORTHO05D005067 4.6e-16 87.8 73 56.2
Thecc.03G161700 Theobroma cacao HOM05D000337 ORTHO05D005067 4.6e-16 87.8 73 56.2
arahy.Tifrunner.gnm1.ann1.I7AZF3 Arachis hypogaea HOM05D000337 ORTHO05D005067 6.0e-16 87.4 73 54.8
FAN03G2257 Fragaria x ananassa HOM05D000504 ORTHO05D000403 6.0e-16 87.4 73 54.8
Sabra12G0097600 Salix brachista HOM05D000337 ORTHO05D005067 6.0e-16 87.4 73 56.2
FvH4_7g28200 Fragaria vesca HOM05D000337 ORTHO05D005067 7.8e-16 87.0 73 54.8
MD07G1258100 Malus domestica HOM05D000337 ORTHO05D005067 7.8e-16 87.0 73 54.8
Medtr1g076690 Medicago truncatula HOM05D000337 ORTHO05D005067 7.8e-16 87.0 74 54.1
Prupe.2G282500 Prunus persica HOM05D000337 ORTHO05D005067 7.8e-16 87.0 73 53.4
TWI14G1151 Tripterygium wilfordii HOM05D000337 ORTHO05D005067 7.8e-16 87.0 73 54.8
Duzib068G1245 Durio zibethinus HOM05D000337 ORTHO05D005067 1.0e-15 86.7 73 54.8
Lj1A984T88 Lonicera japonica HOM05D000337 ORTHO05D005067 1.0e-15 86.7 73 53.4
Manes.06G138100 Manihot esculenta HOM05D000337 ORTHO05D005067 1.0e-15 86.7 67 58.2
Actinidia13553 Actinidia chinensis HOM05D000337 ORTHO05D005067 1.3e-15 86.3 73 53.4
Sabra15G0144600 Salix brachista HOM05D000337 ORTHO05D005067 1.3e-15 86.3 73 53.4
Ca_26394_v3 Cicer arietinum L. HOM05D000337 ORTHO05D005067 1.7e-15 85.9 73 53.4
Ca_29799_v3 Cicer arietinum L. HOM05D000337 ORTHO05D005067 1.7e-15 85.9 73 53.4
Glyma.20G212000 Glycine max HOM05D000337 ORTHO05D005067 1.7e-15 85.9 80 52.5
Hma1.2p1_0654F.1_g196390 Hydrangea macrophylla HOM05D000337 ORTHO05D005067 1.7e-15 85.9 73 54.8
Lalb_Chr06g0168921 Lupinus albus HOM05D000337 ORTHO05D005067 1.7e-15 85.9 67 55.2
VMungo0720G2641 Vigna mungo HOM05D000337 ORTHO05D005067 1.7e-15 85.9 80 53.8
arahy.Tifrunner.gnm1.ann1.68Z3SV Arachis hypogaea HOM05D000337 ORTHO05D005067 2.3e-15 85.5 67 55.2
arahy.Tifrunner.gnm1.ann1.NLN73P Arachis hypogaea HOM05D000337 ORTHO05D005067 2.3e-15 85.5 67 55.2
Lj5g0024374 Lotus japonicus HOM05D000337 ORTHO05D005067 2.3e-15 85.5 73 53.4
Lalb_Chr02g0149951 Lupinus albus HOM05D000337 ORTHO05D005067 2.3e-15 85.5 67 53.7
PGR142G2566 Punica granatum HOM05D000337 ORTHO05D005067 2.3e-15 85.5 67 56.7
Actinidia25039 Actinidia chinensis HOM05D000337 ORTHO05D005067 3.0e-15 85.1 73 52.1
HanXRQChr05g0141391 Helianthus annuus HOM05D000337 ORTHO05D005067 3.0e-15 85.1 72 52.8
Ah.07g208290 Amaranthus hybridus HOM05D000337 ORTHO05D005067 3.9e-15 84.7 74 54.1
CSS0032180 Camellia sinensis var. sinensis HOM05D000337 ORTHO05D005067 3.9e-15 84.7 73 53.4
ECA233G3579 Erigeron canadensis HOM05D000337 ORTHO05D005067 3.9e-15 84.7 73 53.4
FAN03G3387 Fragaria x ananassa HOM05D000337 ORTHO05D005067 3.9e-15 84.7 73 53.4
Nn5g27454 Nelumbo nucifera HOM05D000337 ORTHO05D005067 3.9e-15 84.7 73 53.4
CiPaw.03G097100 Carya illinoinensis HOM05D000337 ORTHO05D005067 5.1e-15 84.3 66 54.5
Rhsim03G0163300 Rhododendron simsii HOM05D000337 ORTHO05D005067 5.1e-15 84.3 73 54.8
TAR381G1244 Trochodendron aralioides HOM05D000337 ORTHO05D005067 5.1e-15 84.3 73 54.8
Aqoxy5G02473 Aquilegia oxysepala HOM05D000337 ORTHO05D005067 6.6e-15 84.0 73 53.4
arahy.Tifrunner.gnm1.ann1.D2VJYT Arachis hypogaea HOM05D000337 ORTHO05D005067 6.6e-15 84.0 66 54.5
Duzib205G1439 Durio zibethinus HOM05D000337 ORTHO05D005067 6.6e-15 84.0 73 50.7
Glyma.10G178200 Glycine max HOM05D000337 ORTHO05D005067 6.6e-15 84.0 80 52.5
Phvul.007G111400 Phaseolus vulgaris HOM05D000337 ORTHO05D005067 6.6e-15 84.0 80 52.5
Potri.015G131600 Populus trichocarpa HOM05D000337 ORTHO05D005067 6.6e-15 84.0 73 52.1
RhsimUnG0154100 Rhododendron simsii HOM05D000337 ORTHO05D005067 6.6e-15 84.0 73 53.4
Sed0003474 Sechium edule HOM05D000337 ORTHO05D005067 6.6e-15 84.0 67 55.2
Sc19g0001850 Simmondsia chinensis HOM05D000337 ORTHO05D005067 6.6e-15 84.0 73 53.4
TWI39G0066 Tripterygium wilfordii HOM05D000337 ORTHO05D005067 8.7e-15 83.6 73 52.1
GSVIVG01018511001 Vitis vinifera HOM05D000337 ORTHO05D005067 8.7e-15 83.6 73 54.8
CSS0027272 Camellia sinensis var. sinensis HOM05D000337 ORTHO05D005067 1.1e-14 83.2 72 52.8
Ca_09891_v3 Cicer arietinum L. HOM05D000337 ORTHO05D005067 1.1e-14 83.2 73 52.1
Ciclev10004704m.g Citrus clementina HOM05D000337 ORTHO05D005067 1.1e-14 83.2 67 53.7
Lalb_Chr21g0311891 Lupinus albus HOM05D000337 ORTHO05D005067 1.1e-14 83.2 73 50.7
Manes.14G033000 Manihot esculenta HOM05D000337 ORTHO05D005067 1.1e-14 83.2 67 55.2
SGA_v2.0_scaffold2G01136 Striga asiatica HOM05D000337 ORTHO05D005067 1.1e-14 83.2 73 50.7
vmacro09886 Vaccinium macrocarpon HOM05D000337 ORTHO05D005067 1.1e-14 83.2 73 53.4
Aa31LG3G8080 Aethionema arabicum HOM05D000337 ORTHO05D005067 1.5e-14 82.8 73 52.1
MSTRG.27168 Avicennia marina HOM05D000337 ORTHO05D005067 1.5e-14 82.8 73 52.1
Cpa.g.sc3.269 Carica papaya HOM05D000337 ORTHO05D005067 1.5e-14 82.8 67 52.2
MELO3C012303.2 Cucumis melo HOM05D000337 ORTHO05D005067 1.5e-14 82.8 67 53.7
Gohir.D07G043700 Gossypium hirsutum HOM05D000337 ORTHO05D005067 1.5e-14 82.8 72 51.4
Nitab4.5_0000072g0350 Nicotiana tabacum HOM05D000337 ORTHO05D005067 1.9e-14 82.4 66 53.0
Potri.012G129700 Populus trichocarpa HOM05D000337 ORTHO05D005067 1.9e-14 82.4 73 52.1
Hund04641 Selenicereus undatus HOM05D000337 ORTHO05D005067 1.9e-14 82.4 67 58.2
Hund11794 Selenicereus undatus HOM05D000337 ORTHO05D005067 1.9e-14 82.4 73 53.4
Nitab4.5_0006649g0010 Nicotiana tabacum HOM05D000337 ORTHO05D005067 2.5e-14 82.0 66 53.0
EL10Ac3g05792 Beta vulgaris HOM05D000337 ORTHO05D005067 3.3e-14 81.6 73 53.4
CAN.G1022.1 Capsicum annuum HOM05D000337 ORTHO05D005067 3.3e-14 81.6 73 50.7
AUR62016101 Chenopodium quinoa HOM05D000337 ORTHO05D005067 4.3e-14 81.3 67 55.2
AUR62043455 Chenopodium quinoa HOM05D000337 ORTHO05D005067 4.3e-14 81.3 67 55.2
CsaV3_5G034930 Cucumis sativus L. HOM05D000337 ORTHO05D005067 4.3e-14 81.3 67 53.7
Oeu042586.1 Olea europaea HOM05D000337 ORTHO05D005067 4.3e-14 81.3 73 52.1
PGSC0003DMG400031026 Solanum tuberosum HOM05D000337 ORTHO05D005067 4.3e-14 81.3 66 53.0
TPR.G16616 Trifolium pratense HOM05D000337 ORTHO05D005067 4.3e-14 81.3 73 52.1
Ah.13g067400 Amaranthus hybridus HOM05D000337 ORTHO05D005067 5.6e-14 80.9 68 55.9
MSTRG.8423 Avicennia marina HOM05D000337 ORTHO05D005067 5.6e-14 80.9 73 50.7
ClCG05G022190 Citrullus lanatus HOM05D000337 ORTHO05D005067 5.6e-14 80.9 67 52.2
Gohir.A12G264000 Gossypium hirsutum HOM05D000337 ORTHO05D005067 5.6e-14 80.9 73 50.7
Sopen03g003110 Solanum pennellii HOM05D000337 ORTHO05D005067 5.6e-14 80.9 66 51.5
Cc02_g03880 Coffea canephora HOM05D000337 ORTHO05D005067 7.3e-14 80.5 73 47.9
CANSAT21G0829 Cannabis sativa HOM05D000337 ORTHO05D005067 9.6e-14 80.1 73 49.3
Gorai.001G046700 Gossypium raimondii HOM05D000337 ORTHO05D005067 9.6e-14 80.1 67 50.7
Hma1.2p1_0099F.1_g048900 Hydrangea macrophylla HOM05D000337 ORTHO05D005067 9.6e-14 80.1 67 53.7
Hma1.2p1_0099F.1_g048860 Hydrangea macrophylla HOM05D000337 ORTHO05D005067 1.2e-13 79.7 67 55.2
Psat6g112640 Pisum sativum HOM05D000337 ORTHO05D005067 1.2e-13 79.7 67 52.2
Peaxi162Scf01372g00043 Petunia axillaris HOM05D000337 ORTHO05D005067 1.6e-13 79.3 66 53.0
Thhalv10013411m.g Eutrema salsugineum HOM05D000337 ORTHO05D005067 2.1e-13 79.0 73 49.3
Thhalv10024876m.g Eutrema salsugineum HOM05D000337 ORTHO05D005067 2.1e-13 79.0 73 50.7
THA.LOC104811508 Tarenaya hassleriana HOM05D000337 ORTHO05D005067 2.1e-13 79.0 73 49.3
Solyc03g007120.3 Solanum lycopersicum HOM05D000337 ORTHO05D005067 2.8e-13 78.6 66 50.0
Atru.chr1.632 Acer truncatum HOM05D000337 ORTHO05D005067 3.6e-13 78.2 67 50.7
Gohir.D12G264200 Gossypium hirsutum HOM05D000337 ORTHO05D005067 3.6e-13 78.2 67 50.7
Gorai.008G283500 Gossypium raimondii HOM05D000337 ORTHO05D005067 3.6e-13 78.2 67 50.7
Cc09_g08790 Coffea canephora HOM05D000337 ORTHO05D005067 4.7e-13 77.8 73 50.7
A01p16650 Brassica napus HOM05D000337 ORTHO05D005067 6.2e-13 77.4 73 49.3
C01p20870 Brassica napus HOM05D000337 ORTHO05D005067 6.2e-13 77.4 73 49.3
BolC1t02014H Brassica oleracea HOM05D000337 ORTHO05D005067 6.2e-13 77.4 73 49.3
CARHR264410 Cardamine hirsuta HOM05D000337 ORTHO05D005067 6.2e-13 77.4 73 47.9
HanXRQChr08g0224031 Helianthus annuus HOM05D000337 ORTHO05D005067 6.2e-13 77.4 73 46.6
Hund04639 Selenicereus undatus HOM05D000337 ORTHO05D005067 6.2e-13 77.4 73 49.3
Migut.F00427 Erythranthe guttata HOM05D000337 ORTHO05D005067 8.1e-13 77.0 67 53.7
Sed0010454 Sechium edule HOM05D000337 ORTHO05D005067 8.1e-13 77.0 67 49.3
BcaNung03687 Brassica carinata HOM05D000337 ORTHO05D005067 1.4e-12 76.3 73 47.9
BraA01t01619Z Brassica rapa HOM05D000337 ORTHO05D005067 1.4e-12 76.3 73 49.3
Carub.0007s1565 Capsella rubella HOM05D000337 ORTHO05D005067 1.4e-12 76.3 66 50.0
Lj8A36G59 Lonicera japonica HOM05D000337 ORTHO05D005067 1.8e-12 75.9 72 48.6
Ah.07g208280 Amaranthus hybridus HOM05D000337 ORTHO05D005067 2.4e-12 75.5 72 41.7
AL7G27770 Arabidopsis lyrata HOM05D000337 ORTHO05D005067 2.4e-12 75.5 66 50.0
AL8G25890 Arabidopsis lyrata HOM05D000337 ORTHO05D005067 2.4e-12 75.5 73 47.9
AT4G25360 Arabidopsis thaliana HOM05D000337 ORTHO05D005067 2.4e-12 75.5 66 50.0
BcaC09g50785 Brassica carinata HOM05D000337 ORTHO05D005067 2.4e-12 75.5 66 50.0
DCAR_018127 Daucus carota HOM05D000337 ORTHO05D005067 2.4e-12 75.5 67 50.7
Sp6g13850 Schrenkiella parvula HOM05D000337 ORTHO05D005067 2.4e-12 75.5 73 46.6
ATR0626G084 Amborella trichopoda HOM05D000337 ORTHO05D005067 3.1e-12 75.1 66 48.5
AT5G51640 Arabidopsis thaliana HOM05D000337 ORTHO05D005067 3.1e-12 75.1 73 47.9
C07p54230 Brassica napus HOM05D000337 ORTHO05D005067 5.3e-12 74.3 66 50.0
Lsat_1_v5_gn_8_8140 Lactuca sativa HOM05D000337 ORTHO05D005067 5.3e-12 74.3 68 50.0
Rhsim09G0193600 Rhododendron simsii HOM05D000337 ORTHO05D005067 5.3e-12 74.3 73 49.3
BolC7t45909H Brassica oleracea HOM05D000337 ORTHO05D005067 6.9e-12 73.9 73 47.9
CARHR232770 Cardamine hirsuta HOM05D000337 ORTHO05D005067 6.9e-12 73.9 73 46.6
Hund04640 Selenicereus undatus HOM05D000337 ORTHO05D005067 6.9e-12 73.9 73 46.6
Zm00001eb364910 Zea mays HOM05D000337 ORTHO05D005067 9.0e-12 73.6 73 46.6
A03p55930 Brassica napus HOM05D000337 ORTHO05D005067 1.2e-11 73.2 73 47.9
BraA03t14664Z Brassica rapa HOM05D000337 ORTHO05D005067 1.2e-11 73.2 73 47.9
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 1.5e-11 72.8 68 48.5
PSO170G1740 Papaver somniferum HOM05D000337 ORTHO05D005067 2.0e-11 72.4 73 49.3
A02p12200 Brassica napus HOM05D000337 ORTHO05D005067 3.4e-11 71.6 73 43.8
BraA02t06285Z Brassica rapa HOM05D000337 ORTHO05D005067 3.4e-11 71.6 73 43.8
DCAR_014611 Daucus carota HOM05D000337 ORTHO05D005067 4.4e-11 71.2 67 50.7
BcaC03g14587 Brassica carinata HOM05D000337 ORTHO05D005067 5.8e-11 70.9 73 43.8
C02p20310 Brassica napus HOM05D000337 ORTHO05D005067 5.8e-11 70.9 73 43.8
BolC2t08165H Brassica oleracea HOM05D000337 ORTHO05D005067 5.8e-11 70.9 73 43.8
AUR62035049 Chenopodium quinoa HOM05D000337 ORTHO05D005067 9.9e-11 70.1 66 45.5
AUR62043454 Chenopodium quinoa HOM05D000337 ORTHO05D005067 9.9e-11 70.1 66 45.5
BcaB05g23996 Brassica carinata HOM05D000337 ORTHO05D005067 1.7e-10 69.3 73 42.5
AUR62016102 Chenopodium quinoa HOM05D000337 ORTHO05D005067 1.7e-10 69.3 66 45.5
HPP92_026250 Vanilla planifolia HOM05D000337 ORTHO05D005067 1.7e-10 69.3 72 48.6
SEGI_11488 Sequoiadendron giganteum HOM05D000337 ORTHO05D005067 2.2e-10 68.9 67 47.8
Ah.13g067390 Amaranthus hybridus HOM05D000337 ORTHO05D005067 6.4e-10 67.4 72 38.9
Os01g0914800 Oryza sativa ssp. japonica HOM05D000337 ORTHO05D005067 1.1e-09 66.6 67 46.3
Mapoly0002s0044 Marchantia polymorpha HOM05D000337 ORTHO05D005067 9.3e-09 63.5 67 40.3
Pp3c1_40460 Physcomitrium patens HOM05D000337 ORTHO05D005067 1.2e-08 63.2 67 34.3
SalBow4G1388 Salvia bowleyana HOM05D000337 ORTHO05D005067 2.1e-08 62.4 48 52.1
AagrBONN_evm.TU.Sc2ySwM_344.1037 Anthoceros agrestis HOM05D000337 ORTHO05D005067 5.6e-06 54.3 68 30.9


User provided reference genes

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