Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 7.7e-29 129.8 66 100.0
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 3.8e-20 100.9 50 98.0
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 8.6e-20 99.8 50 96.0
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 8.6e-20 99.8 54 88.9
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.1e-19 99.4 50 96.0
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 1.5e-19 99.0 50 96.0
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.5e-19 99.0 55 89.1
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 1.9e-19 98.6 50 96.0
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 1.9e-19 98.6 50 94.0
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.9e-19 98.6 50 92.0
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 2.5e-19 98.2 50 94.0
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 2.5e-19 98.2 50 94.0
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 3.3e-19 97.8 50 94.0
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 3.3e-19 97.8 50 94.0
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 3.3e-19 97.8 50 94.0
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 3.3e-19 97.8 50 94.0
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 3.3e-19 97.8 50 94.0
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 3.3e-19 97.8 50 94.0
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 3.3e-19 97.8 50 94.0
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 90.0
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 90.0
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 90.0
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 94.0
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 4.2e-19 97.4 50 90.0
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 5.5e-19 97.1 50 92.0
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 5.5e-19 97.1 50 92.0
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 5.5e-19 97.1 50 94.0
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 5.5e-19 97.1 50 94.0
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 7.2e-19 96.7 50 94.0
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 7.2e-19 96.7 56 85.7
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 7.2e-19 96.7 50 92.0
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 7.2e-19 96.7 50 92.0
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 9.5e-19 96.3 50 92.0
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 9.5e-19 96.3 50 92.0
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 9.5e-19 96.3 50 92.0
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 9.5e-19 96.3 50 90.0
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 9.5e-19 96.3 50 92.0
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 9.5e-19 96.3 50 92.0
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 9.5e-19 96.3 50 92.0
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 9.5e-19 96.3 50 92.0
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 1.2e-18 95.9 50 92.0
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.2e-18 95.9 50 88.0
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 1.2e-18 95.9 50 92.0
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 1.2e-18 95.9 50 92.0
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 1.2e-18 95.9 50 92.0
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 1.2e-18 95.9 50 92.0
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 1.2e-18 95.9 50 92.0
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 1.2e-18 95.9 50 90.0
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 2.1e-18 95.1 49 91.8
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 2.1e-18 95.1 49 91.8
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 2.1e-18 95.1 51 88.2
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 3.6e-18 94.4 50 88.0
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 3.6e-18 94.4 50 90.0
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 3.6e-18 94.4 50 90.0
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 3.6e-18 94.4 50 92.0
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 3.6e-18 94.4 50 88.0
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 3.6e-18 94.4 50 90.0
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 4.7e-18 94.0 50 86.0
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 4.7e-18 94.0 50 86.0
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 4.7e-18 94.0 50 86.0
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 8.0e-18 93.2 50 86.0
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 8.0e-18 93.2 57 77.2
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 8.0e-18 93.2 49 93.9
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 8.0e-18 93.2 50 86.0
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 1.0e-17 92.8 51 86.3
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 1.4e-17 92.4 50 86.0
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 1.4e-17 92.4 50 88.0
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.8e-17 92.0 48 91.7
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 5.2e-17 90.5 56 75.0
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 3.7e-15 84.3 49 81.6
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 1.2e-13 79.3 50 74.0
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.5e-11 72.4 50 62.0
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 3.3e-11 71.2 50 62.0
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 1.9e-06 55.5 27 100.0


User provided reference genes

Program Settings