Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 3.0e-44 181.4 89 100.0
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 5.9e-32 140.6 70 94.3
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 4.2e-30 134.4 70 92.9
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 1.6e-29 132.5 70 85.7
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 2.7e-29 131.7 70 90.0
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.0e-27 125.6 71 80.3
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 1.3e-26 122.9 71 78.9
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.3e-26 122.9 74 77.0
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 1.7e-26 122.5 69 81.2
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 1.7e-26 122.5 69 81.2
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 1.7e-26 122.5 68 83.8
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 2.8e-26 121.7 69 76.8
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 2.8e-26 121.7 68 83.8
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 2.8e-26 121.7 69 84.1
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 3.7e-26 121.3 69 81.2
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 6.3e-26 120.6 72 80.6
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 6.3e-26 120.6 69 79.7
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 6.3e-26 120.6 70 78.6
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 1.1e-25 119.8 68 83.8
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 1.4e-25 119.4 69 79.7
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 2.4e-25 118.6 71 74.6
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 2.4e-25 118.6 71 74.6
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 2.4e-25 118.6 69 79.7
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 5.3e-25 117.5 69 78.3
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 5.3e-25 117.5 69 73.9
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 7.0e-25 117.1 69 76.8
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 7.0e-25 117.1 70 75.7
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 7.0e-25 117.1 69 76.8
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 7.0e-25 117.1 69 78.3
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 1.2e-24 116.3 69 76.8
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 1.2e-24 116.3 69 78.3
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 1.6e-24 115.9 69 76.8
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 2.0e-24 115.5 69 76.8
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 2.0e-24 115.5 77 68.8
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 2.7e-24 115.2 69 75.4
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 2.7e-24 115.2 70 74.3
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 3.5e-24 114.8 69 72.5
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 3.5e-24 114.8 69 73.9
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 3.5e-24 114.8 70 74.3
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 3.5e-24 114.8 69 73.9
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 3.5e-24 114.8 69 73.9
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 3.5e-24 114.8 69 76.8
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 4.5e-24 114.4 69 76.8
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 4.5e-24 114.4 69 72.5
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 4.5e-24 114.4 71 70.4
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 5.9e-24 114.0 69 72.5
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 5.9e-24 114.0 70 70.0
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 5.9e-24 114.0 69 73.9
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 7.7e-24 113.6 69 75.4
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 7.7e-24 113.6 68 76.5
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 1.0e-23 113.2 69 72.5
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 1.0e-23 113.2 69 72.5
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 1.0e-23 113.2 69 78.3
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 1.0e-23 113.2 71 74.6
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 1.3e-23 112.8 70 71.4
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 1.7e-23 112.5 69 72.5
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 1.7e-23 112.5 81 69.1
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 2.2e-23 112.1 68 72.1
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 2.2e-23 112.1 69 71.0
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.2e-23 112.1 67 76.1
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 2.9e-23 111.7 70 70.0
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 2.9e-23 111.7 69 72.5
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 3.8e-23 111.3 70 74.3
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 5.0e-23 110.9 69 71.0
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 6.5e-23 110.5 69 73.9
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 8.5e-23 110.2 69 69.6
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 8.5e-23 110.2 68 72.1
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 1.1e-22 109.8 70 65.7
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 1.5e-22 109.4 69 71.0
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.9e-22 109.0 69 71.0
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 1.9e-22 109.0 71 71.8
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 2.5e-22 108.6 69 72.5
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 2.5e-22 108.6 69 72.5
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 5.5e-22 107.5 75 68.0
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 1.2e-21 106.3 75 65.3
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 1.2e-21 106.3 71 70.4
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 1.6e-21 105.9 69 71.0
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 1.6e-21 105.9 75 66.7
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 2.7e-21 105.1 75 65.3
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 3.6e-21 104.8 78 64.1
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 3.6e-21 104.8 78 64.1
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 3.6e-21 104.8 69 65.2
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 3.6e-21 104.8 70 67.1
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 4.7e-21 104.4 74 62.2
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 4.7e-21 104.4 69 69.6
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 4.7e-21 104.4 75 64.0
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 6.1e-21 104.0 74 64.9
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 6.1e-21 104.0 71 69.0
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 1.0e-20 103.2 75 64.0
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 1.8e-20 102.4 75 64.0
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 1.8e-20 102.4 69 66.7
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 3.0e-20 101.7 91 59.3
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 8.8e-20 100.1 79 63.3
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 1.2e-19 99.8 70 64.3
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 1.5e-19 99.4 117 47.0
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 9.8e-19 96.7 69 58.0
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 3.7e-18 94.7 67 61.2
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 3.7e-18 94.7 67 61.2
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 3.7e-18 94.7 42 97.6
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 1.4e-17 92.8 79 55.7
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 1.8e-17 92.4 69 60.9
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 5.9e-16 87.4 68 57.4
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 1.7e-15 85.9 69 50.7
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 9.8e-11 70.1 37 81.1
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 9.8e-11 70.1 37 81.1
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.3e-10 69.7 37 75.7
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 1.3e-10 69.7 46 73.9
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 8.3e-10 67.0 46 60.9
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 4.1e-09 64.7 37 70.3
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 4.1e-09 64.7 54 50.0
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 5.9e-08 60.8 35 82.9
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 5.9e-08 60.8 38 68.4
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 6.6e-07 57.4 30 73.3


User provided reference genes

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