Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 4.4e-22 107.1 54 100.0
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.7e-13 78.6 45 84.4
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 1.4e-12 75.5 45 82.2
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 9.2e-12 72.8 43 83.7
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 4.5e-11 70.5 38 89.5
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 4.5e-11 70.5 45 77.8
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 5.9e-11 70.1 38 86.8
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.0e-10 69.3 39 87.2
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.0e-10 69.3 45 75.6
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.7e-10 68.6 38 86.8
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.9e-10 67.8 34 94.1
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 3.9e-10 67.4 35 94.3
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 5.0e-10 67.0 36 83.3
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 5.0e-10 67.0 39 84.6
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 5.0e-10 67.0 39 84.6
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 5.0e-10 67.0 44 75.0
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 8.6e-10 66.2 45 71.1
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.1e-09 65.9 43 72.1
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 1.1e-09 65.9 45 71.1
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 1.1e-09 65.9 37 86.5
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 1.9e-09 65.1 36 83.3
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.9e-09 65.1 33 90.9
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.9e-09 65.1 45 71.1
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 1.9e-09 65.1 34 91.2
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 2.5e-09 64.7 45 68.9
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 4.3e-09 63.9 34 88.2
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 4.3e-09 63.9 42 71.4
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 4.3e-09 63.9 34 88.2
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 5.6e-09 63.5 34 85.3
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 5.6e-09 63.5 40 77.5
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 5.6e-09 63.5 45 66.7
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 9.5e-09 62.8 42 71.4
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.2e-08 62.4 40 75.0
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.2e-08 62.4 34 85.3
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.2e-08 62.4 42 69.0
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.6e-08 62.0 34 85.3
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 2.1e-08 61.6 41 70.7
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.1e-08 61.6 42 69.0
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 2.8e-08 61.2 34 88.2
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 2.8e-08 61.2 34 88.2
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 3.6e-08 60.8 34 82.4
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 3.6e-08 60.8 34 82.4
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 3.6e-08 60.8 36 77.8
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 4.7e-08 60.5 34 82.4
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 4.7e-08 60.5 34 82.4
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 6.1e-08 60.1 34 82.4
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 6.1e-08 60.1 34 79.4
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 8.0e-08 59.7 34 79.4
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 8.0e-08 59.7 34 85.3
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 8.0e-08 59.7 33 84.8
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 8.0e-08 59.7 33 84.8
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 1.4e-07 58.9 34 85.3
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.4e-07 58.9 33 81.8
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.4e-07 58.9 45 64.4
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 1.8e-07 58.5 34 76.5
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.8e-07 58.5 33 81.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 2.3e-07 58.2 33 78.8
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 3.1e-07 57.8 33 81.8
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 3.1e-07 57.8 33 78.8
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 3.1e-07 57.8 37 73.0
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 4.0e-07 57.4 35 74.3
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 4.0e-07 57.4 38 71.1
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 5.2e-07 57.0 37 73.0
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 5.2e-07 57.0 37 73.0
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 6.8e-07 56.6 36 72.2
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 6.8e-07 56.6 36 72.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 6.8e-07 56.6 36 75.0
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 6.8e-07 56.6 45 66.7
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 8.9e-07 56.2 33 78.8
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 8.9e-07 56.2 33 78.8
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 8.9e-07 56.2 31 87.1
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.2e-06 55.8 33 78.8
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 1.2e-06 55.8 33 78.8
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.5e-06 55.5 32 81.2
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 1.5e-06 55.5 45 60.0
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 2.0e-06 55.1 34 73.5
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 2.6e-06 54.7 33 75.8
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 2.6e-06 54.7 31 74.2
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 2.6e-06 54.7 33 72.7
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 3.4e-06 54.3 33 75.8
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 3.4e-06 54.3 34 70.6
Peaxi162Scf00304g01114 Petunia axillaris HOM05D005379 ORTHO05D006661 4.4e-06 53.9 32 78.1
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 5.8e-06 53.5 33 72.7


User provided reference genes

Program Settings