Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0373701 Rosa chinensis HOM05D006663 ORTHO05D008269 1.2e-285 985.7 461 100.0
FAN06G2606 Fragaria x ananassa HOM05D006663 ORTHO05D008269 4.9e-279 963.8 461 97.4
FAN06G1593 Fragaria x ananassa HOM05D006663 ORTHO05D008269 7.0e-278 959.9 461 97.2
FvH4_7g26970 Fragaria vesca HOM05D006663 ORTHO05D008269 4.5e-277 957.2 461 97.2
MD01G1177500 Malus domestica HOM05D006663 ORTHO05D008269 1.8e-265 918.7 462 93.5
MD07G1249200 Malus domestica HOM05D006663 ORTHO05D008269 2.6e-264 914.8 462 93.3
Thecc.03G149200 Theobroma cacao HOM05D006663 ORTHO05D008269 1.1e-259 899.4 461 91.5
CiPaw.07G185300 Carya illinoinensis HOM05D006663 ORTHO05D008269 1.5e-259 899.0 461 88.7
COL.COLO4_37343 Corchorus olitorius HOM05D006663 ORTHO05D008269 9.5e-259 896.3 461 90.9
Cpa.g.sc13.257 Carica papaya HOM05D006663 ORTHO05D008269 1.1e-257 892.9 461 89.8
Eucgr.A02922 Eucalyptus grandis HOM05D006663 ORTHO05D008269 5.8e-256 887.1 461 88.5
Actinidia13608 Actinidia chinensis HOM05D006663 ORTHO05D008269 2.2e-255 885.2 461 87.6
Gorai.008G214300 Gossypium raimondii HOM05D006663 ORTHO05D008269 2.2e-255 885.2 461 90.2
CANSAT56G2550 Cannabis sativa HOM05D006663 ORTHO05D008269 3.7e-255 884.4 461 89.6
Gohir.A12G196700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 6.4e-255 883.6 461 89.8
Manes.14G038500 Manihot esculenta HOM05D006663 ORTHO05D008269 8.3e-255 883.2 461 89.8
Hma1.2p1_1580F.1_g291900 Hydrangea macrophylla HOM05D006663 ORTHO05D008269 1.1e-254 882.9 461 88.5
Atru.chr1.907 Acer truncatum HOM05D006663 ORTHO05D008269 1.4e-254 882.5 461 89.2
QL09p027994 Quercus lobata HOM05D006663 ORTHO05D008269 1.4e-254 882.5 476 85.9
Potri.003G151400 Populus trichocarpa HOM05D006663 ORTHO05D008269 5.4e-254 880.6 461 88.9
VMungo0720G2856 Vigna mungo HOM05D006663 ORTHO05D008269 1.2e-253 879.4 461 88.5
GSVIVG01013975001 Vitis vinifera HOM05D006663 ORTHO05D008269 1.2e-253 879.4 461 88.5
Phvul.007G136100 Phaseolus vulgaris HOM05D006663 ORTHO05D008269 1.6e-253 879.0 461 89.2
CSS0030206 Camellia sinensis var. sinensis HOM05D006663 ORTHO05D008269 1.3e-252 875.9 460 86.7
CSS0049195 Camellia sinensis var. sinensis HOM05D006663 ORTHO05D008269 1.3e-252 875.9 460 86.7
Lj5g0020638 Lotus japonicus HOM05D006663 ORTHO05D008269 1.7e-252 875.5 461 88.1
Sed0007931 Sechium edule HOM05D006663 ORTHO05D008269 3.0e-252 874.8 461 86.8
TWI39G0071 Tripterygium wilfordii HOM05D006663 ORTHO05D008269 3.9e-252 874.4 461 88.3
ClCG01G004680 Citrullus lanatus HOM05D006663 ORTHO05D008269 6.6e-252 873.6 461 86.1
arahy.Tifrunner.gnm1.ann1.JS0B2B Arachis hypogaea HOM05D006663 ORTHO05D008269 1.1e-251 872.8 461 88.5
CsaV3_5G004880 Cucumis sativus L. HOM05D006663 ORTHO05D008269 3.3e-251 871.3 461 86.3
arahy.Tifrunner.gnm1.ann1.78X8E3 Arachis hypogaea HOM05D006663 ORTHO05D008269 5.6e-251 870.5 461 88.1
Glyma.20G195600 Glycine max HOM05D006663 ORTHO05D008269 5.6e-251 870.5 461 87.4
Lalb_Chr02g0150831 Lupinus albus HOM05D006663 ORTHO05D008269 9.5e-251 869.8 461 88.1
Rhsim03G0161500 Rhododendron simsii HOM05D006663 ORTHO05D008269 4.7e-250 867.5 461 86.3
Sc10g0004730 Simmondsia chinensis HOM05D006663 ORTHO05D008269 8.1e-250 866.7 461 86.3
Lj1C976T20 Lonicera japonica HOM05D006663 ORTHO05D008269 1.8e-249 865.5 461 85.7
MELO3C005467.2 Cucumis melo HOM05D006663 ORTHO05D008269 2.3e-249 865.1 461 86.1
CANSAT56G3894 Cannabis sativa HOM05D006663 ORTHO05D008269 2.2e-247 858.6 461 87.6
Sabra03G0109600 Salix brachista HOM05D006663 ORTHO05D008269 2.2e-247 858.6 482 84.0
A10p29330 Brassica napus HOM05D006663 ORTHO05D008269 3.2e-246 854.7 461 85.0
TAR636G2266 Trochodendron aralioides HOM05D006663 ORTHO05D008269 7.1e-246 853.6 461 84.6
BcaC06g32493 Brassica carinata HOM05D006663 ORTHO05D008269 1.6e-245 852.4 461 84.6
Potri.001G079100 Populus trichocarpa HOM05D006663 ORTHO05D008269 1.0e-244 849.7 461 86.6
C09p69700 Brassica napus HOM05D006663 ORTHO05D008269 1.3e-244 849.4 461 84.6
BolC9t59713H Brassica oleracea HOM05D006663 ORTHO05D008269 1.3e-244 849.4 461 84.6
THA.LOC104801603 Tarenaya hassleriana HOM05D006663 ORTHO05D008269 3.9e-244 847.8 462 84.4
Lsat_1_v5_gn_8_9600 Lactuca sativa HOM05D006663 ORTHO05D008269 1.5e-243 845.9 461 83.3
Prupe.2G272800 Prunus persica HOM05D006663 ORTHO05D008269 2.5e-243 845.1 461 87.2
MSTRG.8846 Avicennia marina HOM05D006663 ORTHO05D008269 3.3e-243 844.7 461 82.9
Medtr1g090310 Medicago truncatula HOM05D006663 ORTHO05D008269 1.6e-242 842.4 461 84.8
Psat0s1505g0040 Pisum sativum HOM05D006663 ORTHO05D008269 2.1e-242 842.0 461 84.2
HanXRQChr05g0138181 Helianthus annuus HOM05D006663 ORTHO05D008269 6.2e-242 840.5 462 83.5
ECA233G2092 Erigeron canadensis HOM05D006663 ORTHO05D008269 1.1e-241 839.7 458 83.2
Migut.F00523 Erythranthe guttata HOM05D006663 ORTHO05D008269 1.8e-241 839.0 461 82.6
Thhalv10013487m.g Eutrema salsugineum HOM05D006663 ORTHO05D008269 8.9e-241 836.6 461 83.5
Carub.0006s0657 Capsella rubella HOM05D006663 ORTHO05D008269 3.8e-239 831.2 461 82.9
AL6G17900 Arabidopsis lyrata HOM05D006663 ORTHO05D008269 6.4e-239 830.5 461 82.9
AT5G07590 Arabidopsis thaliana HOM05D006663 ORTHO05D008269 6.4e-239 830.5 461 83.1
Oeu042534.1 Olea europaea HOM05D006663 ORTHO05D008269 8.4e-239 830.1 461 82.4
Aqoxy7G00844 Aquilegia oxysepala HOM05D006663 ORTHO05D008269 1.4e-238 829.3 461 82.6
Sabra01G0056700 Salix brachista HOM05D006663 ORTHO05D008269 1.2e-237 826.2 461 84.8
DCAR_020172 Daucus carota HOM05D006663 ORTHO05D008269 1.6e-237 825.9 460 82.4
CARHR205560 Cardamine hirsuta HOM05D006663 ORTHO05D008269 6.0e-237 823.9 461 82.2
Sp6g35280 Schrenkiella parvula HOM05D006663 ORTHO05D008269 6.6e-236 820.5 461 82.0
SGA_v2.0_scaffold60G20812 Striga asiatica HOM05D006663 ORTHO05D008269 9.6e-235 816.6 461 81.3
Aa31LG3G18830 Aethionema arabicum HOM05D006663 ORTHO05D008269 3.4e-232 808.1 488 77.5
Cc02_g04690 Coffea canephora HOM05D006663 ORTHO05D008269 4.4e-232 807.7 461 79.8
ATR0057G058 Amborella trichopoda HOM05D006663 ORTHO05D008269 5.8e-232 807.4 463 79.5
PSO675G3877 Papaver somniferum HOM05D006663 ORTHO05D008269 7.6e-232 807.0 455 81.1
PGSC0003DMG400010747 Solanum tuberosum HOM05D006663 ORTHO05D008269 3.8e-231 804.7 461 80.5
Sopen03g024320 Solanum pennellii HOM05D006663 ORTHO05D008269 8.4e-231 803.5 461 80.7
PSO732G0765 Papaver somniferum HOM05D006663 ORTHO05D008269 4.2e-230 801.2 443 82.2
Hund24931 Selenicereus undatus HOM05D006663 ORTHO05D008269 7.1e-230 800.4 459 79.5
Ciclev10004937m.g Citrus clementina HOM05D006663 ORTHO05D008269 1.0e-228 796.6 461 82.2
Glyma.10G194400 Glycine max HOM05D006663 ORTHO05D008269 3.0e-228 795.0 461 81.3
EL10Ac7g15901 Beta vulgaris HOM05D006663 ORTHO05D008269 3.6e-226 788.1 461 79.0
TPR.G13385 Trifolium pratense HOM05D006663 ORTHO05D008269 8.1e-226 786.9 499 75.2
Nn1g00884 Nelumbo nucifera HOM05D006663 ORTHO05D008269 1.2e-221 773.1 461 79.2
AUR62009686 Chenopodium quinoa HOM05D006663 ORTHO05D008269 8.7e-220 766.9 461 77.2
SEGI_30026 Sequoiadendron giganteum HOM05D006663 ORTHO05D008269 8.1e-218 760.4 465 74.6
Os10g0563300 Oryza sativa ssp. japonica HOM05D006663 ORTHO05D008269 1.2e-216 756.5 469 74.0
PGR042G0458 Punica granatum HOM05D006663 ORTHO05D008269 2.7e-205 718.8 458 74.7
SHI14080 Sapria himalayana HOM05D006663 ORTHO05D008269 3.9e-204 714.9 499 68.5
AUR62001890 Chenopodium quinoa HOM05D006663 ORTHO05D008269 6.3e-202 707.6 461 72.5
FAN10G3253 Fragaria x ananassa HOM05D006663 ORTHO05D008269 9.0e-201 703.7 338 97.3
FAN03G0477 Fragaria x ananassa HOM05D006663 ORTHO05D008269 6.1e-197 691.0 338 96.2
HPP92_025692 Vanilla planifolia HOM05D006663 ORTHO05D008269 1.2e-192 676.8 393 78.6
SMO340G0268 Selaginella moellendorffii HOM05D006663 ORTHO05D008269 5.0e-191 671.4 454 66.7
Haze_22195 Corylus avellana HOM05D006663 ORTHO05D008269 1.9e-190 669.5 341 91.8
Pp3c13_8720 Physcomitrium patens HOM05D006663 ORTHO05D008269 2.3e-188 662.5 460 65.7
Pp3c3_11450 Physcomitrium patens HOM05D006663 ORTHO05D008269 1.8e-185 652.9 461 65.3
Gohir.A09G080000 Gossypium hirsutum HOM05D006663 ORTHO05D008269 5.3e-185 651.4 339 90.0
Gohir.D09G034800 Gossypium hirsutum HOM05D006663 ORTHO05D008269 2.0e-184 649.4 339 90.0
Ca_10369_v3 Cicer arietinum L. HOM05D006663 ORTHO05D008269 2.5e-182 642.5 342 88.3
Ca_10419_v3 Cicer arietinum L. HOM05D006663 ORTHO05D008269 2.5e-182 642.5 342 88.3
Pp3c9_7850 Physcomitrium patens HOM05D006663 ORTHO05D008269 1.0e-180 637.1 460 63.5
Dinv06596 Davidia involucrata HOM05D006663 ORTHO05D008269 1.0e-175 620.5 323 88.5
vmacro06835 Vaccinium macrocarpon HOM05D006663 ORTHO05D008269 1.1e-174 617.1 338 84.9
SalBow3G3051 Salvia bowleyana HOM05D006663 ORTHO05D008269 2.1e-173 612.8 337 83.7
Mapoly0178s0015 Marchantia polymorpha HOM05D006663 ORTHO05D008269 2.7e-173 612.5 457 61.1
Gohir.D04G037700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.1e-169 600.5 311 90.0
Nitab4.5_0007080g0010 Nicotiana tabacum HOM05D006663 ORTHO05D008269 1.5e-166 590.1 337 81.0
CBR_g49329 Chara braunii HOM05D006663 ORTHO05D008269 9.2e-161 570.9 449 57.5
Gohir.D12G199100 Gossypium hirsutum HOM05D006663 ORTHO05D008269 5.6e-150 535.0 292 87.0
Nitab4.5_0021979g0010 Nicotiana tabacum HOM05D006663 ORTHO05D008269 7.3e-150 534.6 296 84.1
SalBow3G2644 Salvia bowleyana HOM05D006663 ORTHO05D008269 2.8e-149 532.7 291 83.8
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 8.0e-149 531.2 337 75.1
Solyc03g093490.3 Solanum lycopersicum HOM05D006663 ORTHO05D008269 3.4e-147 525.8 309 80.9
Zm00001eb325360 Zea mays HOM05D006663 ORTHO05D008269 3.3e-142 509.2 277 83.4
AagrBONN_evm.TU.Sc2ySwM_228.1080 Anthoceros agrestis HOM05D006663 ORTHO05D008269 6.6e-135 485.0 338 63.9
CDE09G0338 Ceratophyllum demersum HOM05D006663 ORTHO05D008269 3.2e-129 466.1 283 77.0
PRCOL_00004773 Prasinoderma coloniale HOM05D006663 ORTHO05D008269 1.7e-106 390.6 450 41.6
Cre13.g567150 Chlamydomonas reinhardtii HOM05D006663 ORTHO05D008269 1.8e-95 354.0 484 37.0
Solyc03g093500.3 Solanum lycopersicum HOM05D006663 ORTHO05D008269 1.2e-75 288.1 161 78.3
Gohir.A03G137100 Gossypium hirsutum HOM05D006663 ORTHO05D008269 3.5e-59 233.4 110 97.3
Gohir.A07G166700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 3.5e-59 233.4 110 97.3
Gohir.A09G003500 Gossypium hirsutum HOM05D006663 ORTHO05D008269 7.7e-59 232.3 110 96.4
SHI00707 Sapria himalayana HOM05D006663 ORTHO05D008269 7.5e-54 215.7 185 58.9
Atru.chr4.2082 Acer truncatum HOM05D006663 ORTHO05D008269 3.0e-39 167.2 99 80.8
BcaC06g32421 Brassica carinata HOM05D006663 ORTHO05D008269 6.4e-13 79.7 40 87.5


User provided reference genes

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