Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.2e-183 646.4 326 100.0
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.7e-177 625.9 317 98.4
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.4e-163 578.9 314 91.4
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-162 576.6 314 90.8
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.2e-161 572.4 314 91.1
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.9e-160 569.3 314 90.4
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.3e-156 556.6 351 81.5
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 7.2e-136 487.6 298 80.5
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 5.2e-134 481.5 321 75.4
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 2.2e-132 476.1 320 74.7
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.3e-126 456.1 311 71.1
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.6e-122 443.4 312 67.3
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 9.5e-120 434.1 311 69.1
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 4.7e-119 431.8 322 67.7
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 6.1e-119 431.4 312 68.6
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 2.0e-117 426.4 312 69.9
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 4.4e-117 425.2 312 68.9
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 4.4e-117 425.2 317 68.1
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 7.5e-117 424.5 314 69.7
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.1e-115 419.1 316 65.8
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.2e-114 417.2 318 64.8
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 7.8e-114 414.5 313 63.9
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 2.9e-113 412.5 312 64.4
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.1e-112 410.6 317 65.0
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.3e-112 408.7 312 64.7
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.2e-111 407.1 312 64.4
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.2e-111 407.1 307 65.8
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.6e-111 406.8 344 60.8
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 1.6e-111 406.8 345 62.0
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.6e-111 405.6 312 64.1
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 8.0e-111 404.4 314 64.0
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 4.0e-110 402.1 314 63.7
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.2e-109 400.6 308 65.6
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.5e-109 400.2 343 59.8
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 9.8e-109 397.5 314 64.0
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.3e-108 397.1 311 65.0
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.8e-107 393.3 308 63.0
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 4.1e-107 392.1 311 63.0
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 7.0e-107 391.3 307 63.8
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.2e-106 390.6 311 64.3
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.6e-106 390.2 306 64.7
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.7e-106 389.4 307 63.5
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 2.7e-106 389.4 306 63.1
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 2.7e-106 389.4 398 52.5
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.8e-106 387.9 309 64.1
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.7e-105 386.7 311 61.7
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.7e-105 386.7 311 61.1
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 3.9e-105 385.6 307 63.5
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.6e-105 384.8 309 63.8
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 6.6e-105 384.8 309 63.4
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 8.6e-105 384.4 325 61.2
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.9e-104 383.3 290 66.6
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 4.3e-104 382.1 317 60.3
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.3e-104 382.1 311 59.8
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.1e-103 379.8 327 59.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.8e-103 379.4 311 59.2
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.4e-102 377.1 332 57.2
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 2.3e-102 376.3 315 61.6
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.2e-101 374.0 307 60.3
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.4e-101 372.1 312 62.2
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.7e-100 370.2 313 58.8
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.9e-100 369.4 308 59.1
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 3.7e-100 369.0 312 59.9
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 3.7e-100 369.0 325 58.8
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 4.9e-100 368.6 312 60.6
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 6.4e-100 368.2 315 59.4
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.9e-99 366.7 228 73.2
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.3e-97 360.5 312 59.3
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 3.9e-97 359.0 322 56.5
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.5e-96 357.1 277 63.2
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 3.3e-96 355.9 313 57.5
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.3e-96 354.8 308 60.1
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 7.3e-96 354.8 310 57.7
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.6e-95 353.6 241 69.3
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 3.6e-95 352.4 241 68.9
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 6.8e-94 348.2 285 62.1
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.8e-94 348.2 246 65.4
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 3.4e-93 345.9 310 58.1
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 4.4e-93 345.5 378 52.4
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 5.8e-93 345.1 311 57.2
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 7.5e-93 344.7 278 62.6
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 7.5e-93 344.7 341 53.7
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.9e-92 342.8 314 57.6
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.9e-92 342.8 349 52.4
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 3.7e-92 342.4 243 66.7
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 3.7e-92 342.4 243 66.7
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 8.3e-92 341.3 349 52.4
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.4e-91 340.5 309 56.6
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.4e-91 339.7 301 59.1
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 9.2e-91 337.8 317 56.5
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.6e-90 335.5 297 57.2
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 7.8e-90 334.7 243 63.4
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.9e-89 332.4 302 58.6
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 4.3e-88 328.9 359 51.8
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 4.3e-88 328.9 266 60.9
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 4.3e-88 328.9 310 52.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.1e-87 326.6 309 54.4
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.4e-86 323.9 308 55.2
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 2.4e-86 323.2 308 51.0
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 5.8e-85 318.5 309 53.4
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 9.9e-85 317.8 274 58.0
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 9.9e-85 317.8 309 51.8
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 9.9e-85 317.8 309 53.4
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.3e-84 317.4 287 55.7
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.9e-84 316.2 355 48.5
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 3.2e-83 312.8 241 63.5
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.2e-82 310.8 311 53.1
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.0e-81 307.8 314 53.5
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 3.9e-81 305.8 249 57.8
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.1e-80 304.3 312 52.2
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 3.3e-80 302.8 331 51.4
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 2.4e-78 296.6 230 61.7
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.2e-77 294.3 307 52.4
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 2.6e-77 293.1 234 61.1
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.4e-75 287.3 301 53.2
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.9e-75 287.0 316 51.9
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.6e-74 283.9 308 48.4
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.1e-74 283.5 281 53.4
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 3.5e-74 282.7 180 71.7
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.3e-73 280.0 220 59.5
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 5.1e-73 278.9 281 50.5
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.8e-71 273.1 317 49.5
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 1.4e-70 270.8 306 48.4
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 3.1e-70 269.6 243 54.7
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.1e-63 246.9 230 50.9
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 3.7e-63 246.1 239 47.3
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.4e-62 244.2 239 46.9
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 4.0e-62 242.7 233 48.1
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.9e-62 241.9 259 45.2
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.4e-59 233.4 259 44.8
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.2e-59 233.0 248 44.8
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 4.2e-59 232.6 310 40.0
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 5.5e-59 232.3 324 40.1
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 2.1e-58 230.3 328 40.2
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 2.1e-58 230.3 328 40.2
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 4.6e-58 229.2 311 39.9
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 4.6e-58 229.2 311 39.9
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.9e-58 228.4 149 68.5
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.8e-57 227.3 300 45.3
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.1e-56 224.6 158 60.1
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 9.6e-56 221.5 335 38.5
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 9.6e-56 221.5 335 38.5
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.3e-55 221.1 333 39.3
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.3e-55 221.1 333 39.3
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.0e-53 213.8 177 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 2.2e-52 210.3 320 38.1
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 4.9e-52 209.1 312 42.9
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.6e-50 204.1 185 59.5
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 3.5e-50 203.0 209 55.5
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 2.2e-47 193.7 319 41.1
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 2.6e-45 186.8 124 69.4
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.7e-39 167.5 181 44.8
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.6e-37 160.2 203 45.3
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.0e-36 158.3 109 64.2
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.4e-30 137.1 82 76.8
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 7.7e-29 132.1 109 58.7
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.0e-28 131.7 147 55.1
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.2e-28 130.6 88 65.9
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-27 128.3 131 46.6
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.6e-26 124.4 88 61.4
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 9.7e-24 115.2 93 58.1
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 8.2e-23 112.1 145 48.3
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 4.5e-21 106.3 148 38.5
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 4.1e-14 83.2 76 55.3
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.5e-12 75.9 132 39.4
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 6.1e-10 69.3 204 31.4
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.3e-09 67.4 132 35.6
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 4.4e-08 63.2 44 65.9
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.3e-07 59.3 132 38.6


User provided reference genes

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