Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0372481 Rosa chinensis HOM05D007683 ORTHO05D009703 1.1e-89 333.2 164 100.0
FAN03G1207 Fragaria x ananassa HOM05D007683 ORTHO05D009703 2.6e-70 268.9 165 83.6
FvH4_7g26070 Fragaria vesca HOM05D007683 ORTHO05D009703 2.6e-65 252.3 165 80.0
FAN01G0748 Fragaria x ananassa HOM05D007683 ORTHO05D009703 1.9e-52 209.5 132 81.8
FAN06G4188 Fragaria x ananassa HOM05D007683 ORTHO05D009703 7.0e-39 164.5 117 75.2
Prupe.2G265400 Prunus persica HOM05D007683 ORTHO05D009703 1.3e-37 160.2 167 59.3
MD01G1169200 Malus domestica HOM05D007683 ORTHO05D009703 1.2e-30 137.1 153 52.3
MD07G1235100 Malus domestica HOM05D007683 ORTHO05D009703 8.6e-29 131.0 163 47.2
COL.COLO4_19470 Corchorus olitorius HOM05D007683 ORTHO05D009703 5.2e-26 121.7 160 48.1
Duzib106G0215 Durio zibethinus HOM05D007683 ORTHO05D009703 3.4e-25 119.0 157 49.0
Thecc.10G184800 Theobroma cacao HOM05D007683 ORTHO05D009703 3.7e-24 115.5 116 56.0
CANSAT56G2075 Cannabis sativa HOM05D007683 ORTHO05D009703 7.8e-22 107.8 70 72.9
Cfa001197 Carpinus fangiana HOM05D007683 ORTHO05D009703 7.8e-22 107.8 149 49.0
Haze_17368 Corylus avellana HOM05D007683 ORTHO05D009703 1.0e-21 107.5 95 63.2
Medtr5g067740 Medicago truncatula HOM05D007683 ORTHO05D009703 1.0e-21 107.5 99 62.6
Psat2g062760 Pisum sativum HOM05D007683 ORTHO05D009703 1.0e-21 107.5 97 60.8
Sed0023040 Sechium edule HOM05D007683 ORTHO05D009703 1.3e-21 107.1 95 55.8
Phvul.009G042800 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 3.9e-21 105.5 93 60.2
Glyma.06G141600 Glycine max HOM05D007683 ORTHO05D009703 1.1e-20 104.0 164 43.3
Phvul.008G186200 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 1.5e-20 103.6 146 48.6
Ciclev10033031m.g Citrus clementina HOM05D007683 ORTHO05D009703 4.3e-20 102.1 86 65.1
VMungo1309G1531 Vigna mungo HOM05D007683 ORTHO05D009703 4.3e-20 102.1 93 59.1
Sed0015955 Sechium edule HOM05D007683 ORTHO05D009703 5.6e-20 101.7 101 54.5
TPR.G7683 Trifolium pratense HOM05D007683 ORTHO05D009703 7.3e-20 101.3 101 56.4
Glyma.02G219100 Glycine max HOM05D007683 ORTHO05D009703 9.5e-20 100.9 146 47.9
LjContig00408g0002016 Lotus japonicus HOM05D007683 ORTHO05D009703 9.5e-20 100.9 146 43.2
ClCG07G005260 Citrullus lanatus HOM05D007683 ORTHO05D009703 1.2e-19 100.5 98 53.1
Hma1.2p1_0264F.1_g105970 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 1.2e-19 100.5 119 47.1
Sabra13G0070100 Salix brachista HOM05D007683 ORTHO05D009703 1.6e-19 100.1 165 41.2
MSTRG.8877 Avicennia marina HOM05D007683 ORTHO05D009703 2.8e-19 99.4 97 58.8
Cc02_g05230 Coffea canephora HOM05D007683 ORTHO05D009703 2.8e-19 99.4 139 47.5
Gohir.A10G177800 Gossypium hirsutum HOM05D007683 ORTHO05D009703 2.8e-19 99.4 94 59.6
Lj1g0018746 Lotus japonicus HOM05D007683 ORTHO05D009703 2.8e-19 99.4 136 47.1
Rhsim03G0153400 Rhododendron simsii HOM05D007683 ORTHO05D009703 2.8e-19 99.4 98 61.2
Potri.013G090200 Populus trichocarpa HOM05D007683 ORTHO05D009703 3.6e-19 99.0 95 54.7
Glyma.14G186400 Glycine max HOM05D007683 ORTHO05D009703 4.7e-19 98.6 153 45.8
Gorai.011G206600 Gossypium raimondii HOM05D007683 ORTHO05D009703 6.2e-19 98.2 147 44.9
QL08p065063 Quercus lobata HOM05D007683 ORTHO05D009703 6.2e-19 98.2 123 51.2
Gohir.D10G184400 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.1e-18 97.4 151 45.0
Nitab4.5_0000171g0240 Nicotiana tabacum HOM05D007683 ORTHO05D009703 1.4e-18 97.1 65 76.9
CsaV3_5G011110 Cucumis sativus L. HOM05D007683 ORTHO05D009703 1.8e-18 96.7 62 71.0
SGA_v2.0_scaffold60G20879 Striga asiatica HOM05D007683 ORTHO05D009703 6.8e-18 94.7 89 55.1
MELO3C020169.2 Cucumis melo HOM05D007683 ORTHO05D009703 8.9e-18 94.4 155 40.6
PGR044G1007 Punica granatum HOM05D007683 ORTHO05D009703 2.0e-17 93.2 120 51.7
Dinv21856 Davidia involucrata HOM05D004933 ORTHO05D005465 2.6e-17 92.8 79 63.3
Peaxi162Scf00073g10232 Petunia axillaris HOM05D007683 ORTHO05D009703 2.6e-17 92.8 130 46.9
Nitab4.5_0006356g0030 Nicotiana tabacum HOM05D007683 ORTHO05D009703 4.4e-17 92.0 64 76.6
TWI73G0272 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 5.8e-17 91.7 110 48.2
Solyc03g095700.1 Solanum lycopersicum HOM05D007683 ORTHO05D009703 7.6e-17 91.3 84 57.1
Cpa.g.sc19.42 Carica papaya HOM05D007683 ORTHO05D009703 9.9e-17 90.9 116 50.0
Lalb_Chr11g0067711 Lupinus albus HOM05D007683 ORTHO05D009703 9.9e-17 90.9 81 60.5
Manes.10G003157 Manihot esculenta HOM05D007683 ORTHO05D009703 1.3e-16 90.5 161 41.0
Atru.chr12.196 Acer truncatum HOM05D007683 ORTHO05D009703 2.2e-16 89.7 112 45.5
Ah.12g064430 Amaranthus hybridus HOM05D007683 ORTHO05D009703 2.2e-16 89.7 93 55.9
Oeu008103.1 Olea europaea HOM05D007683 ORTHO05D009703 3.8e-16 89.0 92 56.5
TAR633G1265 Trochodendron aralioides HOM05D007683 ORTHO05D009703 3.8e-16 89.0 89 55.1
Lj6g0012778 Lotus japonicus HOM05D007683 ORTHO05D009703 4.9e-16 88.6 153 40.5
DCAR_014661 Daucus carota HOM05D007683 ORTHO05D009703 8.4e-16 87.8 101 50.5
Gohir.D06G187100 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.9e-15 86.7 141 42.6
Gorai.010G219400 Gossypium raimondii HOM05D007683 ORTHO05D009703 2.4e-15 86.3 141 44.0
PGSC0003DMG400020609 Solanum tuberosum HOM05D007683 ORTHO05D009703 2.7e-14 82.8 135 42.2
TWI09G1439 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 2.7e-14 82.8 120 49.2
Eucgr.J00104 Eucalyptus grandis HOM05D007683 ORTHO05D009703 3.5e-14 82.4 94 50.0
Sopen03g025620 Solanum pennellii HOM05D007683 ORTHO05D009703 3.5e-14 82.4 144 39.6
Hma1.2p1_1805F.1_g303190 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 5.1e-13 78.6 47 76.6
THA.LOC104823170 Tarenaya hassleriana HOM05D007683 ORTHO05D009703 8.7e-13 77.8 90 48.9
VMungo0647G1507 Vigna mungo HOM05D007683 ORTHO05D009703 8.7e-13 77.8 71 60.6
Nn2g10270 Nelumbo nucifera HOM05D007683 ORTHO05D009703 5.6e-12 75.1 61 57.4
Aa31LG11G6070 Aethionema arabicum HOM05D007683 ORTHO05D009703 9.6e-12 74.3 87 47.1
Ah.11g042460 Amaranthus hybridus HOM05D007683 ORTHO05D009703 2.8e-11 72.8 108 42.6
Carub.0006s0415 Capsella rubella HOM05D007683 ORTHO05D009703 1.1e-10 70.9 72 51.4
Gohir.A06G180150 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.1e-10 70.9 58 62.1
Sp6g37610 Schrenkiella parvula HOM05D007683 ORTHO05D009703 1.1e-10 70.9 115 38.3
Thhalv10014989m.g Eutrema salsugineum HOM05D007683 ORTHO05D009703 1.4e-10 70.5 99 44.4
AT5G05220 Arabidopsis thaliana HOM05D007683 ORTHO05D009703 4.0e-10 68.9 127 37.8
BcaC06g32231 Brassica carinata HOM05D007683 ORTHO05D009703 4.0e-10 68.9 60 53.3
C09p71480 Brassica napus HOM05D007683 ORTHO05D009703 5.2e-10 68.6 120 37.5
BolC9t59911H Brassica oleracea HOM05D007683 ORTHO05D009703 5.2e-10 68.6 68 51.5
AL6G15060 Arabidopsis lyrata HOM05D007683 ORTHO05D009703 6.9e-10 68.2 72 50.0
BcaB05g21726 Brassica carinata HOM05D007683 ORTHO05D009703 6.9e-10 68.2 72 50.0
A10p30970 Brassica napus HOM05D007683 ORTHO05D009703 6.9e-10 68.2 68 52.9
BraA10t45142Z Brassica rapa HOM05D007683 ORTHO05D009703 6.9e-10 68.2 68 52.9
CARHR208020 Cardamine hirsuta HOM05D007683 ORTHO05D009703 1.2e-09 67.4 52 59.6
Migut.F00568 Erythranthe guttata HOM05D007683 ORTHO05D009703 2.0e-09 66.6 136 37.5
CDE07G1521 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 1.1e-07 60.8 84 44.0
Lsat_1_v5_gn_2_126821 Lactuca sativa HOM05D007683 ORTHO05D009703 1.1e-07 60.8 42 64.3
ATR1127G105 Amborella trichopoda HOM05D007683 ORTHO05D009703 1.4e-07 60.5 85 42.4
MBI15_g36064_MAGBIO Magnolia biondii HOM05D007683 ORTHO05D009703 7.1e-07 58.2 49 61.2
BcaC03g13152 Brassica carinata HOM05D007683 ORTHO05D009703 1.6e-06 57.0 38 68.4
ECA238G0799 Erigeron canadensis HOM05D007683 ORTHO05D009703 1.6e-06 57.0 42 59.5
Zm00001eb015980 Zea mays HOM05D007683 ORTHO05D009703 2.7e-06 56.2 146 30.1
HPP92_006689 Vanilla planifolia HOM05D007683 ORTHO05D009703 6.0e-06 55.1 49 59.2


User provided reference genes

Program Settings