Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 1.2e-28 129.0 59 100.0
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 2.6e-28 127.9 59 98.3
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 2.6e-28 127.9 59 98.3
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 1.2e-25 119.0 60 91.7
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-25 119.0 60 91.7
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.0e-24 114.4 60 88.3
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.8e-22 107.1 77 70.1
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 2.6e-20 101.3 58 74.1
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.5e-20 100.5 57 73.7
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.0e-19 97.1 58 70.7
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 6.5e-19 96.7 57 71.9
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 1.4e-18 95.5 53 81.1
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 5.5e-18 93.6 57 70.2
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.6e-17 92.0 59 71.2
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.6e-17 92.0 55 70.9
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 2.7e-17 91.3 58 70.7
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 2.7e-17 91.3 56 67.9
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 7.9e-17 89.7 59 66.1
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.4e-16 89.0 57 66.7
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.4e-16 89.0 57 66.7
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 1.8e-16 88.6 58 69.0
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 2.3e-16 88.2 54 72.2
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 2.3e-16 88.2 57 63.2
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.0e-16 87.8 57 64.9
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 3.9e-16 87.4 59 67.8
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 3.9e-16 87.4 52 73.1
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 5.1e-16 87.0 52 69.2
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 6.7e-16 86.7 52 71.2
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 1.5e-15 85.5 62 59.7
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 1.9e-15 85.1 54 66.7
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 3.3e-15 84.3 56 62.5
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 4.3e-15 84.0 52 67.3
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 5.7e-15 83.6 49 71.4
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 7.4e-15 83.2 54 66.7
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 7.4e-15 83.2 51 68.6
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 9.7e-15 82.8 54 66.7
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.3e-14 82.4 50 68.0
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 1.3e-14 82.4 57 59.6
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 1.3e-14 82.4 53 66.0
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.7e-14 82.0 52 65.4
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.7e-14 82.0 57 61.4
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 3.7e-14 80.9 53 62.3
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 8.2e-14 79.7 59 61.0
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 1.1e-13 79.3 58 62.1
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 2.4e-13 78.2 53 60.4
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 6.9e-13 76.6 54 64.8
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 6.9e-13 76.6 54 64.8
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 1.2e-12 75.9 58 60.3
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 1.2e-12 75.9 61 60.7
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.0e-12 75.1 58 60.3
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.0e-12 75.1 58 60.3
FAN06G1351 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.6e-12 74.7 33 97.0
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 3.4e-12 74.3 54 61.1
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.7e-11 72.0 72 50.0
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 2.9e-11 71.2 58 62.1
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 3.8e-11 70.9 57 57.9
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 3.8e-11 70.9 52 55.8
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 5.0e-11 70.5 52 61.5
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 5.0e-11 70.5 52 61.5
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 6.5e-11 70.1 58 55.2
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 6.5e-11 70.1 58 55.2
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 1.1e-10 69.3 48 60.4
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.1e-10 69.3 48 60.4
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 1.4e-10 68.9 55 49.1
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 1.9e-10 68.6 43 72.1
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.9e-10 68.6 94 40.4
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 2.5e-10 68.2 57 59.6
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 2.5e-10 68.2 56 58.9
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 2.5e-10 68.2 56 58.9
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 2.5e-10 68.2 56 58.9
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 2.5e-10 68.2 55 56.4
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 2.5e-10 68.2 54 59.3
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 4.2e-10 67.4 38 73.7
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 5.5e-10 67.0 48 62.5
Sed0014987 Sechium edule HOM05D007120 ORTHO05D008881 7.2e-10 66.6 59 49.2
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 1.2e-09 65.9 52 57.7
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 1.2e-09 65.9 52 57.7
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-09 65.9 43 62.8
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 1.2e-09 65.9 48 56.2
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 1.6e-09 65.5 47 59.6
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 2.1e-09 65.1 39 66.7
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.6e-09 64.3 43 60.5
Ciclev10033060m.g Citrus clementina HOM05D007120 ORTHO05D008881 4.7e-09 63.9 45 64.4
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 4.7e-09 63.9 48 56.2
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 7.9e-09 63.2 48 56.2
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 1.0e-08 62.8 40 65.0
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 1.0e-08 62.8 47 63.8
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 1.4e-08 62.4 48 56.2
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.8e-08 62.0 53 56.6
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 1.8e-08 62.0 42 59.5
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 1.8e-08 62.0 48 58.3
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.8e-08 62.0 36 75.0
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 2.3e-08 61.6 40 65.0
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 2.3e-08 61.6 40 65.0
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 2.3e-08 61.6 54 59.3
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 3.0e-08 61.2 41 70.7
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 3.0e-08 61.2 40 65.0
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 3.0e-08 61.2 40 65.0
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 5.1e-08 60.5 39 66.7
ClCG11G005640 Citrullus lanatus HOM05D007120 ORTHO05D008881 2.0e-07 58.5 41 68.3
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 2.0e-07 58.5 36 69.4
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 2.6e-07 58.2 38 71.1
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 4.4e-07 57.4 41 63.4
EL10Ac2g02666 Beta vulgaris HOM05D007120 ORTHO05D008881 9.7e-07 56.2 44 56.8
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 1.3e-06 55.8 35 71.4


User provided reference genes

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