Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 6.0e-129 464.2 231 100.0
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.1e-77 292.4 253 67.6
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.0e-75 287.3 260 65.8
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.0e-75 287.3 260 65.8
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.1e-74 283.9 198 78.3
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.4e-64 250.4 244 60.7
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 2.4e-61 239.6 250 57.2
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 3.2e-61 239.2 246 57.3
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.2e-49 200.7 248 50.0
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.2e-49 200.7 248 50.0
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.2e-49 200.7 254 46.9
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 8.9e-48 194.5 254 47.6
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.0e-47 193.4 244 48.8
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.0e-47 193.4 230 51.3
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 4.4e-47 192.2 246 48.4
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 7.6e-47 191.4 227 49.8
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.7e-46 190.3 255 45.9
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.7e-46 190.3 223 52.0
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.7e-46 190.3 235 48.5
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 8.4e-46 188.0 243 47.3
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 8.4e-46 188.0 236 47.0
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.4e-45 186.4 237 48.1
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 3.2e-45 186.0 236 46.6
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 5.4e-45 185.3 159 62.3
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 9.2e-45 184.5 246 45.9
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.6e-44 183.7 237 48.1
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 3.5e-44 182.6 241 48.1
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 7.8e-44 181.4 193 52.3
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.0e-43 181.0 237 49.4
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-43 180.6 230 49.1
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.3e-43 180.6 230 49.1
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.3e-43 180.6 248 46.0
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.3e-43 180.6 234 46.6
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.3e-43 179.9 252 46.0
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 3.0e-43 179.5 250 46.0
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.9e-43 179.1 242 47.9
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 3.9e-43 179.1 225 49.3
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 5.1e-43 178.7 245 46.1
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 6.6e-43 178.3 232 47.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 6.6e-43 178.3 202 48.5
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 8.7e-43 177.9 230 48.7
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 8.7e-43 177.9 230 48.7
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 8.7e-43 177.9 235 47.2
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.9e-42 176.8 183 55.7
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 2.5e-42 176.4 209 49.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.3e-42 176.0 244 45.9
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 3.3e-42 176.0 251 45.8
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 5.6e-42 175.3 202 50.5
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 5.6e-42 175.3 202 50.5
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 7.3e-42 174.9 166 56.6
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.2e-41 174.1 237 46.0
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.6e-41 173.7 222 47.3
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 8.1e-41 171.4 186 52.7
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 8.1e-41 171.4 186 52.7
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 8.1e-41 171.4 230 47.0
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.1e-40 171.0 185 52.4
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.1e-40 171.0 253 46.6
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.1e-40 171.0 190 52.1
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.4e-40 170.6 229 41.9
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.8e-40 170.2 228 45.6
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.8e-40 170.2 220 45.9
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.8e-40 170.2 241 44.4
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 2.4e-40 169.9 229 44.5
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 2.4e-40 169.9 235 44.7
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 2.4e-40 169.9 183 54.6
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.4e-40 169.9 247 45.3
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.1e-40 169.5 171 49.7
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.0e-40 169.1 228 45.2
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.3e-40 168.7 228 45.2
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 6.9e-40 168.3 183 48.6
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 9.0e-40 167.9 175 52.6
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 9.0e-40 167.9 240 45.4
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 9.0e-40 167.9 234 43.6
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.6e-39 166.4 189 47.1
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 3.4e-39 166.0 159 54.7
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 3.4e-39 166.0 180 51.7
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 4.4e-39 165.6 208 49.0
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 4.4e-39 165.6 236 43.6
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 9.9e-39 164.5 177 50.8
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.3e-38 164.1 228 47.4
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.7e-38 163.7 196 51.0
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.2e-38 163.3 247 44.9
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 3.8e-38 162.5 212 45.8
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 3.8e-38 162.5 212 45.8
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 6.4e-38 161.8 153 57.5
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.4e-37 160.6 166 53.0
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-37 160.6 216 47.2
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 1.4e-37 160.6 213 46.9
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.4e-37 160.6 215 47.0
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 3.2e-37 159.5 209 46.4
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 5.4e-37 158.7 217 47.0
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 5.4e-37 158.7 192 49.5
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 7.1e-37 158.3 248 40.7
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 7.1e-37 158.3 158 53.8
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.2e-36 157.5 182 50.0
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.6e-36 157.1 182 50.0
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.8e-36 154.8 157 53.5
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.0e-35 154.5 155 50.3
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.0e-35 152.9 193 49.2
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 1.1e-34 151.0 231 43.7
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 3.3e-34 149.4 232 38.4
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 5.6e-34 148.7 169 46.7
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.6e-33 146.0 239 40.6
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 1.1e-32 144.4 158 51.3
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.4e-32 144.1 189 41.8
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.4e-32 144.1 239 41.0
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.8e-32 143.7 239 41.8
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 5.3e-32 142.1 166 49.4
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.5e-31 140.6 214 43.0
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 9.9e-31 137.9 181 44.2
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.7e-30 137.1 164 47.6
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.4e-29 134.0 241 36.9
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.9e-29 133.7 155 43.9
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.1e-28 130.2 115 58.3
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 4.6e-28 129.0 162 43.2
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.0e-28 128.6 115 58.3
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 7.9e-28 128.3 194 38.7
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 1.3e-27 127.5 215 39.1
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 1.8e-27 127.1 171 41.5
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.8e-27 127.1 191 42.4
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.3e-27 126.7 192 37.5
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.3e-27 126.7 192 37.5
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.3e-27 126.7 219 36.5
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 2.3e-27 126.7 194 39.2
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 2.3e-27 126.7 194 38.7
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 5.1e-27 125.6 225 37.8
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 6.7e-27 125.2 218 38.1
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.1e-26 124.4 150 50.0
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.3e-26 122.9 218 37.6
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 4.3e-26 122.5 159 39.0
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 5.6e-26 122.1 116 56.9
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 5.6e-26 122.1 237 38.8
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 5.6e-26 122.1 162 47.5
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.3e-25 120.9 216 37.0
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.6e-25 120.6 158 44.9
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 1.6e-25 120.6 197 37.6
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.8e-25 119.8 190 41.6
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 4.8e-25 119.0 185 38.9
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.1e-24 116.3 158 42.4
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 9.0e-24 114.8 161 44.7
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 7.6e-23 111.7 168 40.5
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 7.6e-23 111.7 161 39.1
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 6.4e-22 108.6 152 38.8
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 6.4e-22 108.6 159 41.5
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 6.4e-22 108.6 184 34.2
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.4e-21 107.5 160 36.9
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.2e-20 104.4 185 34.1
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-18 97.8 176 38.6
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 5.6e-18 95.5 158 34.2
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 8.2e-17 91.7 156 35.3
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 8.2e-17 91.7 176 36.4
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-15 87.8 102 45.1
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.0e-15 87.0 196 35.2
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 4.5e-15 85.9 68 63.2
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 5.8e-15 85.5 173 32.4
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.9e-14 83.2 170 34.7
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.8e-14 82.8 219 30.1
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 6.5e-14 82.0 89 46.1
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.9e-13 80.5 112 40.2
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 5.5e-13 79.0 71 59.2
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 5.1e-11 72.4 93 39.8
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.5e-10 70.1 258 26.7
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 4.3e-10 69.3 89 46.1
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 6.5e-06 55.5 115 34.8


User provided reference genes

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