Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0372111 Rosa chinensis HOM05D007229 ORTHO05D009131 4.6e-92 341.3 180 100.0
FvH4_7g25840 Fragaria vesca HOM05D007229 ORTHO05D009131 1.2e-84 316.6 180 90.6
FAN06G3440 Fragaria x ananassa HOM05D007229 ORTHO05D009131 1.2e-84 316.6 180 90.6
Prupe.2G263300 Prunus persica HOM05D007229 ORTHO05D009131 2.3e-75 285.8 180 83.3
MD07G1232800 Malus domestica HOM05D007229 ORTHO05D009131 1.3e-67 260.0 182 76.9
Haze_17350 Corylus avellana HOM05D000154 ORTHO05D000092 2.3e-67 259.2 177 76.3
Hma1.2p1_2086F.1_g313730 Hydrangea macrophylla HOM05D007229 ORTHO05D009131 1.2e-63 246.9 176 73.9
QL08p064765 Quercus lobata HOM05D007229 ORTHO05D009131 1.4e-61 240.0 175 70.3
arahy.Tifrunner.gnm1.ann1.B9ILCP Arachis hypogaea HOM05D007229 ORTHO05D009131 9.4e-61 237.3 177 72.9
Glyma.06G143700 Glycine max HOM05D007229 ORTHO05D009131 3.6e-60 235.3 175 70.3
Lalb_Chr11g0067841 Lupinus albus HOM05D007229 ORTHO05D009131 3.6e-60 235.3 175 71.4
Potri.019G056400 Populus trichocarpa HOM05D007229 ORTHO05D009131 3.6e-60 235.3 177 70.1
arahy.Tifrunner.gnm1.ann1.I1HNZH Arachis hypogaea HOM05D007229 ORTHO05D009131 6.1e-60 234.6 177 72.3
Lj1g0022940 Lotus japonicus HOM05D007229 ORTHO05D009131 6.1e-60 234.6 175 71.4
Glyma.04G221700 Glycine max HOM05D007229 ORTHO05D009131 1.0e-59 233.8 175 70.3
Lsat_1_v5_gn_8_13541 Lactuca sativa HOM05D007229 ORTHO05D009131 1.4e-59 233.4 180 70.6
Thecc.10G183800 Theobroma cacao HOM05D007229 ORTHO05D009131 3.0e-59 232.3 175 70.3
Dinv26059 Davidia involucrata HOM05D007229 ORTHO05D009131 5.1e-59 231.5 177 70.6
GSVIVG01032702001 Vitis vinifera HOM05D007229 ORTHO05D009131 5.1e-59 231.5 175 69.1
Manes.07G139500 Manihot esculenta HOM05D007229 ORTHO05D009131 6.7e-59 231.1 176 69.9
VMungo1309G1820 Vigna mungo HOM05D007229 ORTHO05D009131 1.1e-58 230.3 177 69.5
Phvul.009G142501 Phaseolus vulgaris HOM05D007229 ORTHO05D009131 2.6e-58 229.2 175 68.6
Ciclev10033477m.g Citrus clementina HOM05D007229 ORTHO05D009131 3.3e-58 228.8 172 69.8
Lj1A965T45 Lonicera japonica HOM05D007229 ORTHO05D009131 4.4e-58 228.4 179 65.4
Rhsim09G0184500 Rhododendron simsii HOM05D007229 ORTHO05D009131 9.7e-58 227.3 175 65.7
Cc02_g05510 Coffea canephora HOM05D007229 ORTHO05D009131 1.3e-57 226.9 183 65.6
ECA233G6234 Erigeron canadensis HOM05D007229 ORTHO05D009131 1.3e-57 226.9 144 78.5
HanXRQChr08g0222581 Helianthus annuus HOM05D007229 ORTHO05D009131 1.3e-57 226.9 184 71.7
Medtr3g094080 Medicago truncatula HOM05D007229 ORTHO05D009131 3.7e-57 225.3 177 67.8
Manes.10G004800 Manihot esculenta HOM05D007229 ORTHO05D009131 4.8e-57 224.9 176 66.5
PSO339G1638 Papaver somniferum HOM05D007229 ORTHO05D009131 8.2e-57 224.2 139 78.4
Sabra19G0072100 Salix brachista HOM05D007229 ORTHO05D009131 1.4e-56 223.4 178 68.5
Actinidia00993 Actinidia chinensis HOM05D007229 ORTHO05D009131 1.8e-56 223.0 178 66.3
COL.COLO4_19452 Corchorus olitorius HOM05D007229 ORTHO05D009131 2.4e-56 222.6 176 68.2
PSO384G2154 Papaver somniferum HOM05D007229 ORTHO05D009131 2.4e-56 222.6 139 78.4
Psat5g069080 Pisum sativum HOM05D007229 ORTHO05D009131 2.4e-56 222.6 176 67.0
TWI53G0143 Tripterygium wilfordii HOM05D007229 ORTHO05D009131 2.4e-56 222.6 175 66.9
CiPaw.01G306000 Carya illinoinensis HOM05D007229 ORTHO05D009131 4.1e-56 221.9 181 69.6
Duzib114G0482 Durio zibethinus HOM05D007229 ORTHO05D009131 6.9e-56 221.1 177 67.2
TPR.G16113 Trifolium pratense HOM05D007229 ORTHO05D009131 1.5e-55 219.9 177 68.4
PGR044G2361 Punica granatum HOM05D007229 ORTHO05D009131 3.4e-55 218.8 178 69.7
TAR369G0442 Trochodendron aralioides HOM05D007229 ORTHO05D009131 5.9e-55 218.0 176 65.9
MBI15_g35108_MAGBIO Magnolia biondii HOM05D007229 ORTHO05D009131 1.3e-54 216.9 180 66.1
Gohir.A05G403900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 2.2e-54 216.1 175 65.1
Oeu020108.1 Olea europaea HOM05D007229 ORTHO05D009131 2.2e-54 216.1 182 66.5
Gohir.D04G011900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 2.9e-54 215.7 175 65.1
Sc14g0005610 Simmondsia chinensis HOM05D007229 ORTHO05D009131 2.9e-54 215.7 174 67.2
PGSC0003DMG400024310 Solanum tuberosum HOM05D007229 ORTHO05D009131 5.0e-54 214.9 176 64.2
Gorai.012G014100 Gossypium raimondii HOM05D007229 ORTHO05D009131 1.1e-53 213.8 175 64.6
Peaxi162Scf00739g00125 Petunia axillaris HOM05D000154 ORTHO05D000092 1.1e-53 213.8 180 64.4
Sopen06g015630 Solanum pennellii HOM05D007229 ORTHO05D009131 4.2e-53 211.8 178 64.6
SalBow3G2298 Salvia bowleyana HOM05D007229 ORTHO05D009131 7.2e-53 211.1 168 68.5
Cpa.g.sc19.82 Carica papaya HOM05D007229 ORTHO05D009131 9.4e-53 210.7 151 72.8
ClCG07G004950 Citrullus lanatus HOM05D007229 ORTHO05D009131 1.2e-52 210.3 175 64.6
MELO3C020131.2 Cucumis melo HOM05D007229 ORTHO05D009131 1.6e-52 209.9 174 66.7
Hund13463 Selenicereus undatus HOM05D007229 ORTHO05D009131 2.1e-52 209.5 142 74.6
CSS0032880 Camellia sinensis var. sinensis HOM05D007229 ORTHO05D009131 2.7e-52 209.1 179 64.2
Migut.F00594 Erythranthe guttata HOM05D007229 ORTHO05D009131 6.1e-52 208.0 121 81.8
Solyc06g050170.4 Solanum lycopersicum HOM05D000154 ORTHO05D000092 1.4e-51 206.8 180 64.4
MSTRG.27273 Avicennia marina HOM05D007229 ORTHO05D009131 1.8e-51 206.5 177 63.8
CsaV3_5G010830 Cucumis sativus L. HOM05D007229 ORTHO05D009131 2.3e-51 206.1 174 66.1
CAN.G55.3 Capsicum annuum HOM05D007229 ORTHO05D009131 3.0e-51 205.7 118 83.1
DCAR_019811 Daucus carota HOM05D007229 ORTHO05D009131 3.9e-51 205.3 123 82.1
SGA_v2.0_scaffold60G20901 Striga asiatica HOM05D007229 ORTHO05D009131 5.2e-51 204.9 161 68.3
SEGI_31216 Sequoiadendron giganteum HOM05D007229 ORTHO05D009131 1.1e-50 203.8 159 64.8
CDE12G0285 Ceratophyllum demersum HOM05D007229 ORTHO05D009131 1.5e-50 203.4 122 81.1
Duzib106G0259 Durio zibethinus HOM05D007229 ORTHO05D009131 5.7e-50 201.4 140 73.6
Sed0026302 Sechium edule HOM05D007229 ORTHO05D009131 9.7e-50 200.7 173 65.3
EL10Ac2g04250 Beta vulgaris HOM05D007229 ORTHO05D009131 1.3e-49 200.3 196 57.7
AT3G56290 Arabidopsis thaliana HOM05D007229 ORTHO05D009131 2.2e-49 199.5 139 69.8
Sp5g06210 Schrenkiella parvula HOM05D007229 ORTHO05D009131 4.8e-49 198.4 177 61.6
THA.LOC104824356 Tarenaya hassleriana HOM05D007229 ORTHO05D009131 4.8e-49 198.4 119 81.5
AUR62012362 Chenopodium quinoa HOM05D007229 ORTHO05D009131 6.3e-49 198.0 118 79.7
BcaB01g00004 Brassica carinata HOM05D007229 ORTHO05D009131 1.4e-48 196.8 139 72.7
BcaB01g00005 Brassica carinata HOM05D007229 ORTHO05D009131 1.4e-48 196.8 139 72.7
CARHR166450 Cardamine hirsuta HOM05D007229 ORTHO05D009131 1.4e-48 196.8 179 61.5
Os01g0823600 Oryza sativa ssp. japonica HOM05D007229 ORTHO05D009131 1.8e-48 196.4 122 77.0
Aa31LG10G11190 Aethionema arabicum HOM05D007229 ORTHO05D009131 4.1e-48 195.3 119 77.3
Thhalv10006268m.g Eutrema salsugineum HOM05D007229 ORTHO05D009131 4.1e-48 195.3 119 79.8
A09p49260 Brassica napus HOM05D007229 ORTHO05D009131 7.0e-48 194.5 139 71.9
BraA09t40379Z Brassica rapa HOM05D007229 ORTHO05D009131 7.0e-48 194.5 139 71.9
HPP92_017919 Vanilla planifolia HOM05D007229 ORTHO05D009131 1.6e-47 193.4 146 65.8
BcaC07g39946 Brassica carinata HOM05D007229 ORTHO05D009131 2.6e-47 192.6 140 70.7
C08p31620 Brassica napus HOM05D007229 ORTHO05D009131 2.6e-47 192.6 140 70.7
BolC8t50783H Brassica oleracea HOM05D007229 ORTHO05D009131 2.6e-47 192.6 140 70.7
AL5G37620 Arabidopsis lyrata HOM05D007229 ORTHO05D009131 3.5e-47 192.2 117 77.8
C06p23470 Brassica napus HOM05D007229 ORTHO05D009131 5.9e-47 191.4 177 59.9
Carub.0005s2307 Capsella rubella HOM05D007229 ORTHO05D009131 7.7e-47 191.0 156 64.1
Aqoxy2G00722 Aquilegia oxysepala HOM05D007229 ORTHO05D009131 1.0e-46 190.7 169 66.3
AUR62031491 Chenopodium quinoa HOM05D000154 ORTHO05D000092 1.0e-46 190.7 112 80.4
BolC6t37520H Brassica oleracea HOM05D007229 ORTHO05D009131 1.3e-46 190.3 177 59.9
BcaC08g44777 Brassica carinata HOM05D007229 ORTHO05D009131 1.7e-46 189.9 177 59.9
A07p22880 Brassica napus HOM05D007229 ORTHO05D009131 1.7e-46 189.9 177 59.9
BraA07t29954Z Brassica rapa HOM05D007229 ORTHO05D009131 1.7e-46 189.9 177 59.9
Pp3c19_14460 Physcomitrium patens HOM05D007229 ORTHO05D009131 1.6e-44 183.3 120 73.3
Mapoly0032s0114 Marchantia polymorpha HOM05D007229 ORTHO05D009131 3.6e-44 182.2 119 72.3
FAN01G1364 Fragaria x ananassa HOM05D007229 ORTHO05D009131 8.0e-44 181.0 114 86.0
BcaB02g07659 Brassica carinata HOM05D007229 ORTHO05D009131 3.3e-42 175.6 148 64.2
ATR0681G125 Amborella trichopoda HOM05D007229 ORTHO05D009131 9.7e-42 174.1 165 57.6
SMO230G0076 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 3.7e-41 172.2 121 69.4
Nitab4.5_0003695g0030 Nicotiana tabacum HOM05D007229 ORTHO05D009131 6.3e-41 171.4 176 55.1
Nitab4.5_0000109g0540 Nicotiana tabacum HOM05D000154 ORTHO05D009131 7.0e-40 167.9 182 53.8
vmacro09972 Vaccinium macrocarpon HOM05D007229 ORTHO05D009131 1.2e-39 167.2 179 50.8
SMO230G0102 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 9.8e-34 147.5 101 72.3
SMO230G0113 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 9.8e-34 147.5 101 72.3
SabraUnG0004000 Salix brachista HOM05D007229 ORTHO05D009131 1.0e-27 127.5 122 60.7
Sed0009884 Sechium edule HOM05D007229 ORTHO05D009131 9.8e-26 120.9 123 55.3
Ah.10g035980 Amaranthus hybridus HOM05D007229 ORTHO05D009131 4.9e-25 118.6 173 44.5
MD01G1165900 Malus domestica HOM05D000154 ORTHO05D000092 1.2e-23 114.0 58 87.9
Nn2g10342 Nelumbo nucifera HOM05D000154 ORTHO05D000092 1.7e-22 110.2 67 76.1
Zm00001eb149430 Zea mays HOM05D007229 ORTHO05D009131 3.6e-20 102.4 120 52.5
AagrBONN_evm.TU.Sc2ySwM_344.3614 Anthoceros agrestis HOM05D007229 ORTHO05D009131 4.7e-20 102.1 81 69.1
Eucgr.J00129 Eucalyptus grandis HOM05D007229 ORTHO05D009131 4.4e-10 68.9 59 66.1


User provided reference genes

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