Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 7.9e-155 550.4 285 100.0
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.0e-121 439.5 272 87.5
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.1e-116 423.7 281 82.9
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 2.5e-108 396.0 258 83.3
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.4e-103 379.4 294 72.8
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 2.4e-103 379.4 256 79.7
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 1.5e-100 370.2 279 73.5
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 1.8e-98 363.2 289 69.6
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 4.0e-98 362.1 256 74.6
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 2.0e-97 359.8 286 66.1
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 4.4e-97 358.6 277 70.0
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 9.8e-97 357.5 258 72.9
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 1.3e-96 357.1 254 74.4
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 1.3e-96 357.1 260 74.6
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 4.9e-96 355.1 279 67.7
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 6.4e-96 354.8 254 73.2
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 1.9e-95 353.2 255 73.7
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 4.1e-95 352.1 260 71.9
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 1.6e-94 350.1 255 73.7
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 6.0e-94 348.2 257 73.2
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 7.8e-94 347.8 278 66.5
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 1.7e-93 346.7 275 68.0
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 2.3e-93 346.3 280 65.7
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 3.0e-93 345.9 262 70.6
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 5.0e-93 345.1 255 72.2
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 6.6e-93 344.7 256 73.0
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 8.6e-93 344.4 278 66.2
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 8.6e-93 344.4 255 71.0
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 7.3e-92 341.3 254 72.4
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 7.3e-92 341.3 257 72.8
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 1.6e-91 340.1 254 72.4
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 2.1e-91 339.7 253 72.3
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 3.6e-91 339.0 254 71.3
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 3.6e-91 339.0 256 69.9
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 1.4e-90 337.0 262 69.1
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 3.1e-90 335.9 191 91.6
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 4.0e-90 335.5 256 69.5
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 5.2e-90 335.1 254 70.5
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 8.9e-90 334.3 285 64.2
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 2.6e-89 332.8 256 69.5
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 3.4e-89 332.4 253 70.8
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 3.4e-89 332.4 256 69.5
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 4.4e-89 332.0 282 64.5
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 7.5e-89 331.3 296 64.5
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 1.7e-88 330.1 254 70.1
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 2.2e-88 329.7 257 69.3
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 2.2e-88 329.7 285 63.2
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 2.9e-88 329.3 256 68.8
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 4.9e-88 328.6 272 65.8
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 1.9e-87 326.6 254 70.1
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 3.2e-87 325.9 242 71.9
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 1.6e-86 323.6 256 68.4
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 2.7e-86 322.8 256 69.1
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 4.6e-86 322.0 274 65.0
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 2.3e-85 319.7 257 67.3
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 3.0e-85 319.3 257 67.3
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 6.6e-85 318.2 254 67.7
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 8.6e-85 317.8 253 66.8
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 8.6e-85 317.8 255 66.3
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 4.3e-84 315.5 254 68.5
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 2.1e-83 313.2 253 66.4
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 6.2e-83 311.6 259 63.3
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 8.1e-83 311.2 254 64.6
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 2.4e-82 309.7 286 59.4
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 2.4e-82 309.7 295 58.3
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 3.1e-82 309.3 256 64.5
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 4.0e-82 308.9 285 58.6
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 1.5e-81 307.0 255 64.7
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 1.5e-81 307.0 255 64.7
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 1.5e-81 307.0 254 64.2
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 3.4e-81 305.8 252 65.5
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 4.4e-81 305.4 252 65.1
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 7.6e-81 304.7 252 65.5
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 2.9e-80 302.8 277 59.2
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 1.6e-78 297.0 251 63.7
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 2.1e-78 296.6 248 70.2
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.0e-77 294.3 283 59.0
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 2.3e-77 293.1 252 62.7
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 5.1e-77 292.0 219 72.1
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 8.7e-77 291.2 248 64.5
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 1.1e-76 290.8 249 64.3
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 6.2e-75 285.0 223 68.2
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.4e-74 283.1 251 64.1
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 4.0e-74 282.3 280 59.6
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 6.9e-74 281.6 245 64.1
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 9.0e-74 281.2 216 68.1
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 9.9e-73 277.7 254 61.4
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 2.3e-69 266.5 276 54.3
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 1.9e-63 246.9 288 50.3
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 1.4e-58 230.7 271 52.4
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 8.4e-56 221.5 166 69.9
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 1.4e-55 220.7 209 63.2
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.7e-46 189.9 251 51.0
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 1.8e-42 177.2 139 69.1
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 7.7e-41 171.8 127 66.1
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 8.5e-40 168.3 134 63.4
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 4.6e-38 162.5 90 95.6
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 6.1e-38 162.2 168 54.8
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 2.4e-34 150.2 100 82.0
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 4.5e-33 146.0 93 86.0
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.4e-31 141.0 77 97.4
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 2.5e-31 140.2 139 54.7
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 7.2e-31 138.7 93 82.8
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 8.5e-24 115.2 118 60.2
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 1.4e-23 114.4 74 83.8
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 3.0e-21 106.7 99 59.6
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 5.3e-18 95.9 238 31.5
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 1.0e-16 91.7 57 80.7
FAN05G0645 Fragaria x ananassa HOM05D001482 ORTHO05D017727 2.9e-08 63.5 43 76.7
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 3.6e-06 56.6 38 71.1


User provided reference genes

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