Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 2.8e-111 405.2 196 100.0
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.7e-87 326.2 236 70.8
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 5.4e-78 294.7 170 87.6
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 2.3e-76 289.3 154 90.3
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.2e-74 283.5 153 88.2
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 3.2e-70 268.9 189 71.4
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 4.7e-66 255.0 193 67.4
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 1.7e-63 246.5 208 63.0
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 6.7e-36 154.8 194 45.9
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 1.4e-33 147.1 176 51.7
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 1.2e-32 144.1 169 49.7
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 2.0e-32 143.3 173 50.3
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 3.4e-32 142.5 181 48.6
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 7.6e-32 141.4 199 45.2
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 1.7e-31 140.2 180 46.7
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 2.2e-31 139.8 186 46.8
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 2.9e-31 139.4 165 52.1
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 3.8e-31 139.0 199 44.7
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 1.1e-30 137.5 193 45.1
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 1.1e-30 137.5 162 49.4
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 7.9e-29 131.3 151 48.3
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 1.0e-28 131.0 184 43.5
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 1.3e-28 130.6 199 42.2
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 1.8e-28 130.2 176 47.2
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 2.3e-28 129.8 177 41.8
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 3.0e-28 129.4 142 48.6
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 3.3e-27 125.9 157 47.8
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 3.3e-27 125.9 159 48.4
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 3.3e-27 125.9 166 46.4
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 1.3e-26 124.0 177 45.2
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 1.6e-26 123.6 147 48.3
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 2.1e-26 123.2 177 44.1
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 4.8e-26 122.1 187 43.3
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 6.2e-26 121.7 173 45.1
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 8.2e-26 121.3 169 43.8
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 1.1e-25 120.9 153 49.7
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 3.1e-25 119.4 200 41.0
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 4.0e-25 119.0 195 40.0
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 5.3e-25 118.6 176 43.8
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 9.0e-25 117.9 179 43.6
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 1.2e-24 117.5 181 43.6
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 2.0e-24 116.7 188 41.5
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 2.0e-24 116.7 136 52.9
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 5.8e-24 115.2 181 43.6
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 5.8e-24 115.2 175 42.9
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 7.6e-24 114.8 166 42.8
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 1.3e-23 114.0 166 42.8
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 1.7e-23 113.6 176 43.2
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 2.2e-23 113.2 178 42.7
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 2.9e-23 112.8 166 41.6
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 3.8e-23 112.5 175 44.0
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 6.5e-23 111.7 167 40.7
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 8.4e-23 111.3 208 37.5
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 1.1e-22 110.9 174 42.0
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 9.3e-22 107.8 165 38.8
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 1.2e-21 107.5 181 41.4
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 1.6e-21 107.1 152 45.4
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 2.1e-21 106.7 163 41.7
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 1.3e-20 104.0 163 39.3
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 1.1e-19 100.9 140 42.9
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 4.3e-19 99.0 150 40.0
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 5.7e-19 98.6 193 36.3
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.6e-18 97.1 193 38.3
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 4.8e-18 95.5 174 39.7
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 6.3e-18 95.1 168 38.1
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 6.9e-17 91.7 149 40.3
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 9.0e-17 91.3 151 39.7
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 5.9e-16 88.6 191 37.2
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 7.7e-16 88.2 150 42.0
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 2.9e-15 86.3 118 43.2
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 2.5e-14 83.2 150 41.3
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 4.2e-14 82.4 80 58.8
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 7.2e-14 81.6 156 36.5
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 1.6e-13 80.5 148 35.8
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 4.6e-13 79.0 158 33.5
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 2.3e-12 76.6 81 53.1
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 9.7e-11 71.2 175 30.3
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.3e-10 70.9 99 48.5
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 2.4e-09 66.6 120 36.7
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 1.5e-08 63.9 85 42.4
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 2.6e-08 63.2 180 31.7
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.3e-07 60.8 146 31.5
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 1.3e-07 60.8 84 40.5
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 1.7e-07 60.5 179 31.3
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 1.7e-07 60.5 167 28.7
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 2.2e-07 60.1 165 28.5
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 2.9e-07 59.7 163 30.1
Peaxi162Scf00329g00121 Petunia axillaris HOM05D000727 ORTHO05D000541 2.9e-07 59.7 148 32.4
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 3.8e-07 59.3 185 27.6
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 3.8e-07 59.3 169 27.8
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 3.8e-07 59.3 84 40.5
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 6.5e-07 58.5 147 32.7
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 6.5e-07 58.5 176 27.3
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 6.5e-07 58.5 192 27.6
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 8.5e-07 58.2 172 29.7
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 8.5e-07 58.2 163 29.4
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 1.1e-06 57.8 188 28.2
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 1.1e-06 57.8 174 27.6
MBI03_g40382_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 1.4e-06 57.4 65 43.1
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 1.9e-06 57.0 62 51.6
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 1.9e-06 57.0 210 26.7
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.5e-06 56.6 182 28.0
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 4.2e-06 55.8 183 26.8
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 4.2e-06 55.8 179 28.5
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 5.5e-06 55.5 179 28.5
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 7.2e-06 55.1 178 29.2
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 7.2e-06 55.1 178 28.1
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 9.4e-06 54.7 160 26.2
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 9.4e-06 54.7 183 26.8


User provided reference genes

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