Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0371481 Rosa chinensis HOM05D002744 ORTHO05D008989 9.0e-105 383.6 201 100.0
FvH4_7g25501 Fragaria vesca HOM05D002744 ORTHO05D008989 3.9e-92 341.7 201 85.6
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 8.8e-92 340.5 201 85.1
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.3e-91 338.6 201 85.6
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 8.2e-90 334.0 201 84.6
MD07G1229300 Malus domestica HOM05D002744 ORTHO05D008989 8.0e-85 317.4 200 82.0
MD01G1161400 Malus domestica HOM05D002744 ORTHO05D008989 3.0e-84 315.5 200 81.0
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.2e-82 309.3 223 73.1
Ciclev10032836m.g Citrus clementina HOM05D002744 ORTHO05D008989 5.3e-73 278.1 194 75.3
GSVIVG01032723001 Vitis vinifera HOM05D002744 ORTHO05D008989 9.1e-73 277.3 194 74.2
CiPaw.02G197300 Carya illinoinensis HOM05D002744 ORTHO05D008989 1.7e-71 273.1 194 71.1
QL08p064284 Quercus lobata HOM05D002744 ORTHO05D008989 4.2e-70 268.5 194 73.2
Dinv21809 Davidia involucrata HOM05D002744 ORTHO05D008989 1.0e-68 263.8 200 71.5
PGR142G3983 Punica granatum HOM05D002744 ORTHO05D008989 1.2e-67 260.4 191 70.7
Haze_17321 Corylus avellana HOM05D002744 ORTHO05D008989 3.4e-67 258.8 194 69.6
Eucgr.G03110 Eucalyptus grandis HOM05D002744 ORTHO05D008989 3.4e-67 258.8 194 71.1
Thecc.10G007100 Theobroma cacao HOM05D002744 ORTHO05D008989 7.5e-67 257.7 194 71.1
Sed0024728 Sechium edule HOM05D002744 ORTHO05D008989 9.8e-67 257.3 194 69.6
CsaV3_5G010720 Cucumis sativus L. HOM05D002744 ORTHO05D008989 1.3e-66 256.9 194 69.6
Cc02_g05720 Coffea canephora HOM05D002744 ORTHO05D008989 1.7e-66 256.5 191 70.2
CANSAT56G2966 Cannabis sativa HOM05D002744 ORTHO05D008989 2.8e-66 255.8 194 67.0
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 8.3e-66 254.2 170 74.7
Gohir.D04G071200 Gossypium hirsutum HOM05D002744 ORTHO05D008989 4.1e-65 251.9 172 74.4
TWI38G2197 Tripterygium wilfordii HOM05D002744 ORTHO05D008989 5.4e-65 251.5 193 65.8
arahy.Tifrunner.gnm1.ann1.HIE7A8 Arachis hypogaea HOM05D002744 ORTHO05D008989 9.1e-65 250.8 194 64.4
Manes.10G008400 Manihot esculenta HOM05D002744 ORTHO05D008989 9.1e-65 250.8 193 68.9
Gohir.A05G332500 Gossypium hirsutum HOM05D002744 ORTHO05D008989 4.5e-64 248.4 174 74.1
Glyma.11G234700 Glycine max HOM05D002744 ORTHO05D008989 5.9e-64 248.1 199 65.3
Glyma.18G022300 Glycine max HOM05D002744 ORTHO05D008989 1.0e-63 247.3 194 65.5
Duzib114G0765 Durio zibethinus HOM05D002744 ORTHO05D008989 1.3e-63 246.9 196 68.9
Hund13513 Selenicereus undatus HOM05D002744 ORTHO05D008989 1.7e-63 246.5 191 66.0
Rhsim09G0182800 Rhododendron simsii HOM05D002744 ORTHO05D008989 3.8e-63 245.4 192 69.8
Actinidia00986 Actinidia chinensis HOM05D002744 ORTHO05D008989 1.1e-62 243.8 195 68.2
arahy.Tifrunner.gnm1.ann1.B5C26Y Arachis hypogaea HOM05D002744 ORTHO05D008989 2.5e-62 242.7 194 62.4
MSTRG.12212 Avicennia marina HOM05D002744 ORTHO05D008989 4.2e-62 241.9 183 68.3
Migut.A01076 Erythranthe guttata HOM05D002744 ORTHO05D008989 4.2e-62 241.9 193 65.3
HanXRQChr17g0560791 Helianthus annuus HOM05D002744 ORTHO05D008989 5.5e-62 241.5 195 66.2
arahy.Tifrunner.gnm1.ann1.N80L0Z Arachis hypogaea HOM05D002744 ORTHO05D008989 7.2e-62 241.1 190 62.6
Nn2g11068 Nelumbo nucifera HOM05D002744 ORTHO05D008989 9.5e-62 240.7 188 69.1
Gorai.012G080100 Gossypium raimondii HOM05D002744 ORTHO05D008989 3.6e-61 238.8 184 69.6
Peaxi162Scf00284g00123 Petunia axillaris HOM05D002744 ORTHO05D008989 3.6e-61 238.8 192 66.1
Hma1.2p1_1240F.1_g269640 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 6.1e-61 238.0 159 76.1
EL10Ac2g04293 Beta vulgaris HOM05D002744 ORTHO05D008989 1.8e-60 236.5 191 67.0
DCAR_011891 Daucus carota HOM05D002744 ORTHO05D008989 1.8e-60 236.5 155 76.8
Nitab4.5_0000928g0050 Nicotiana tabacum HOM05D002744 ORTHO05D008989 3.0e-60 235.7 191 66.0
AUR62022976 Chenopodium quinoa HOM05D002744 ORTHO05D008989 4.0e-60 235.3 189 66.7
Lju41C22T0 Lonicera japonica HOM05D002744 ORTHO05D008989 6.8e-60 234.6 159 77.4
Potri.008G075600 Populus trichocarpa HOM05D002744 ORTHO05D008989 6.8e-60 234.6 185 67.6
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.5e-59 233.4 166 70.5
Lj8C58T1 Lonicera japonica HOM05D002744 ORTHO05D008989 2.0e-59 233.0 159 76.7
Phvul.001G248100 Phaseolus vulgaris HOM05D002744 ORTHO05D008989 2.0e-59 233.0 194 60.8
Sopen02g021690 Solanum pennellii HOM05D002744 ORTHO05D008989 4.4e-59 231.9 192 64.6
ECA233G4001 Erigeron canadensis HOM05D002744 ORTHO05D008989 1.3e-58 230.3 198 63.1
SalBow3G4547 Salvia bowleyana HOM05D002744 ORTHO05D008989 1.3e-58 230.3 184 65.8
Atru.BG.256.p Acer truncatum HOM05D002744 ORTHO05D008989 1.7e-58 229.9 154 77.3
Carub.0005s2299 Capsella rubella HOM05D002744 ORTHO05D008989 2.2e-58 229.6 187 61.0
AL5G37530 Arabidopsis lyrata HOM05D002744 ORTHO05D008989 2.8e-58 229.2 187 61.0
AUR62012334 Chenopodium quinoa HOM05D002744 ORTHO05D008989 1.8e-57 226.5 153 73.2
Nitab4.5_0000263g0100 Nicotiana tabacum HOM05D002744 ORTHO05D008989 1.8e-57 226.5 172 69.2
Sabra08G0056200 Salix brachista HOM05D002744 ORTHO05D008989 1.8e-57 226.5 191 63.4
Sp5g06290 Schrenkiella parvula HOM05D002744 ORTHO05D008989 1.8e-57 226.5 189 63.5
Ca_15179_v3 Cicer arietinum L. HOM05D002744 ORTHO05D008989 3.1e-57 225.7 194 60.8
Lj6g0011522 Lotus japonicus HOM05D002744 ORTHO05D008989 5.4e-57 224.9 196 62.2
THA.LOC104824346 Tarenaya hassleriana HOM05D002744 ORTHO05D008989 9.2e-57 224.2 187 61.5
Thhalv10006252m.g Eutrema salsugineum HOM05D002744 ORTHO05D008989 1.6e-56 223.4 187 62.0
Medtr3g072120 Medicago truncatula HOM05D002744 ORTHO05D008989 1.6e-56 223.4 195 61.5
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.0e-56 223.0 159 72.3
TPR.G28641 Trifolium pratense HOM05D002744 ORTHO05D008989 2.7e-56 222.6 194 60.8
PSO017G6389 Papaver somniferum HOM05D002744 ORTHO05D008989 3.5e-56 222.2 198 59.1
PSO170G0776 Papaver somniferum HOM05D002744 ORTHO05D008989 1.3e-55 220.3 198 58.6
Prupe.2G259500 Prunus persica HOM05D002744 ORTHO05D008989 1.7e-55 219.9 133 87.2
Lalb_Chr08g0231351 Lupinus albus HOM05D002744 ORTHO05D008989 3.8e-55 218.8 191 59.2
Lsat_1_v5_gn_8_13401 Lactuca sativa HOM05D002744 ORTHO05D008989 5.0e-55 218.4 155 71.6
AT3G56210 Arabidopsis thaliana HOM05D002744 ORTHO05D008989 1.9e-54 216.5 186 60.2
BcaB08g34630 Brassica carinata HOM05D002744 ORTHO05D008989 3.3e-54 215.7 189 61.4
SGA_v2.0_scaffold36G14267 Striga asiatica HOM05D002744 ORTHO05D008989 3.3e-54 215.7 180 67.2
CARHR166360 Cardamine hirsuta HOM05D002744 ORTHO05D008989 7.3e-54 214.5 163 63.8
vmacro09984 Vaccinium macrocarpon HOM05D002744 ORTHO05D008989 1.2e-53 213.8 224 55.4
VMungo1383G3724 Vigna mungo HOM05D002744 ORTHO05D008989 4.7e-53 211.8 194 57.2
Oeu026180.1 Olea europaea HOM05D002744 ORTHO05D008989 1.5e-51 206.8 137 78.1
Os03g0665800 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D008989 1.5e-51 206.8 164 61.0
A09p49190 Brassica napus HOM05D002744 ORTHO05D008989 2.6e-51 206.1 190 59.5
TAR369G0133 Trochodendron aralioides HOM05D000826 ORTHO05D001831 5.8e-51 204.9 150 72.0
BraA09t40372Z Brassica rapa HOM05D002744 ORTHO05D008989 7.5e-51 204.5 198 57.6
ClCG07G004800 Citrullus lanatus HOM05D002744 ORTHO05D008989 3.7e-50 202.2 194 60.8
HPP92_013966 Vanilla planifolia HOM05D002744 ORTHO05D008989 3.7e-50 202.2 175 58.9
unitig_32.g11706 Utricularia gibba HOM05D002744 ORTHO05D008989 3.2e-49 199.1 177 60.5
unitig_33.g30211 Utricularia gibba HOM05D002744 ORTHO05D008989 3.2e-49 199.1 177 60.5
ATR0681G046 Amborella trichopoda HOM05D000826 ORTHO05D008989 4.1e-49 198.7 166 62.7
Hma1.2p1_1240F.1_g269630 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 5.0e-47 191.8 136 75.0
EL10Ac2g04295 Beta vulgaris HOM05D002744 ORTHO05D008989 6.2e-45 184.9 146 66.4
C08p31530 Brassica napus HOM05D002744 ORTHO05D008989 2.3e-44 183.0 154 65.6
BcaC07g39936 Brassica carinata HOM05D002744 ORTHO05D008989 5.2e-44 181.8 151 65.6
Lj1A963T49 Lonicera japonica HOM05D002744 ORTHO05D008989 8.9e-44 181.0 111 82.0
SEGI_09795 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 3.4e-43 179.1 174 55.7
BcaB01g00016 Brassica carinata HOM05D002744 ORTHO05D008989 3.2e-41 172.6 152 59.9
PGSC0003DMG400010239 Solanum tuberosum HOM05D002744 ORTHO05D008989 5.4e-41 171.8 121 75.2
CDE02G4284 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 9.2e-41 171.0 116 72.4
MELO3C020107.2 Cucumis melo HOM05D002744 ORTHO05D008989 1.2e-40 170.6 194 50.5
Solyc02g076790.4 Solanum lycopersicum HOM05D002744 ORTHO05D008989 4.6e-40 168.7 121 72.7
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 4.6e-40 168.7 121 66.1
TAR623G0678 Trochodendron aralioides HOM05D002744 ORTHO05D008989 7.8e-40 167.9 121 72.7
Aa31LG10G11120 Aethionema arabicum HOM05D002744 ORTHO05D008989 1.1e-36 157.5 117 66.7
BcaB01g00017 Brassica carinata HOM05D002744 ORTHO05D008989 5.2e-36 155.2 167 52.7
BolC8t50775H Brassica oleracea HOM05D002744 ORTHO05D008989 1.5e-35 153.7 189 47.1
Gohir.A10G240750 Gossypium hirsutum HOM05D002744 ORTHO05D008989 8.3e-34 147.9 123 65.0
Hma1.2p1_0322F.1_g124790 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 5.6e-30 135.2 152 48.7
SEGI_38813 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 2.8e-29 132.9 107 61.7
Mapoly0001s0439 Marchantia polymorpha HOM05D002744 ORTHO05D008989 5.2e-28 128.6 161 45.3
Psat5g130160 Pisum sativum HOM05D002744 ORTHO05D008989 7.6e-27 124.8 105 61.9
Sc10g0002800 Simmondsia chinensis HOM05D002744 ORTHO05D008989 1.2e-24 117.5 134 52.2
CDE01G0559 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 1.3e-23 114.0 148 46.6
Pp3c8_1670 Physcomitrium patens HOM05D002744 ORTHO05D008989 1.4e-17 94.0 97 46.4
SMO147G0318 Selaginella moellendorffii HOM05D002744 ORTHO05D008989 4.8e-13 79.0 132 34.1
Psat5g125520 Pisum sativum HOM05D002744 ORTHO05D008989 6.4e-10 68.6 61 54.1
C06p23580 Brassica napus HOM05D002744 ORTHO05D008989 1.2e-08 64.3 48 58.3
CAN.G118.19 Capsicum annuum HOM05D002744 ORTHO05D008989 6.7e-07 58.5 46 60.9


User provided reference genes

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