Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0371041 Rosa chinensis HOM05D006653 ORTHO05D008346 1.4e-172 609.4 286 100.0
FAN01G0493 Fragaria x ananassa HOM05D006653 ORTHO05D008346 2.8e-123 445.7 293 73.7
FAN06G1821 Fragaria x ananassa HOM05D006653 ORTHO05D008346 2.3e-122 442.6 293 73.4
Prupe.2G256500 Prunus persica HOM05D006653 ORTHO05D008346 4.4e-113 411.8 287 69.7
FAN03G1392 Fragaria x ananassa HOM05D006653 ORTHO05D008346 6.0e-110 401.4 293 67.9
FAN10G0035 Fragaria x ananassa HOM05D006653 ORTHO05D008346 1.3e-109 400.2 286 68.2
MD01G1158200 Malus domestica HOM05D006653 ORTHO05D008346 1.1e-108 397.1 279 67.4
MD07G1226900 Malus domestica HOM05D006653 ORTHO05D008346 4.1e-103 378.6 279 65.6
Cfa001271 Carpinus fangiana HOM05D006653 ORTHO05D008346 2.5e-100 369.4 291 60.8
QL08p063830 Quercus lobata HOM05D006653 ORTHO05D008346 4.7e-99 365.2 288 61.5
Hma1.2p1_1013F.1_g247760 Hydrangea macrophylla HOM05D006653 ORTHO05D008346 4.4e-97 358.6 284 59.9
CSS0019013 Camellia sinensis var. sinensis HOM05D006653 ORTHO05D008346 5.8e-97 358.2 287 58.9
GSVIVG01032749001 Vitis vinifera HOM05D006653 ORTHO05D008346 7.6e-97 357.8 284 62.0
Actinidia29724 Actinidia chinensis HOM05D006653 ORTHO05D008346 3.7e-96 355.5 287 60.3
CiPaw.01G301500 Carya illinoinensis HOM05D006653 ORTHO05D008346 6.4e-96 354.8 293 60.4
Potri.008G073200 Populus trichocarpa HOM05D006653 ORTHO05D008346 7.8e-94 347.8 284 59.9
Glyma.18G024100 Glycine max HOM05D006653 ORTHO05D008346 1.3e-93 347.1 262 61.1
Ciclev10032369m.g Citrus clementina HOM05D006653 ORTHO05D008346 1.9e-92 343.2 282 55.7
Duzib106G1369 Durio zibethinus HOM05D006653 ORTHO05D008346 4.3e-92 342.0 276 57.2
Nn2g13243 Nelumbo nucifera HOM05D006653 ORTHO05D008346 4.3e-92 342.0 288 56.6
TWI53G0670 Tripterygium wilfordii HOM05D006653 ORTHO05D008346 7.3e-92 341.3 280 57.5
Haze_17274 Corylus avellana HOM05D006653 ORTHO05D008346 1.6e-91 340.1 322 54.3
Haze_17283 Corylus avellana HOM05D006653 ORTHO05D008346 3.6e-91 339.0 322 54.3
CsaV3_5G010530 Cucumis sativus L. HOM05D006653 ORTHO05D008346 8.1e-91 337.8 289 55.7
Lalb_Chr23g0277111 Lupinus albus HOM05D006653 ORTHO05D008346 1.1e-90 337.4 271 55.4
Lj6g0008682 Lotus japonicus HOM05D006653 ORTHO05D008346 1.8e-90 336.7 263 57.8
Medtr3g071640 Medicago truncatula HOM05D006653 ORTHO05D008346 5.2e-90 335.1 259 58.7
Sed0010106 Sechium edule HOM05D006653 ORTHO05D008346 5.2e-90 335.1 282 56.7
TAR633G2597 Trochodendron aralioides HOM05D006653 ORTHO05D008346 1.2e-89 334.0 271 57.9
Aqoxy2G00794 Aquilegia oxysepala HOM05D006653 ORTHO05D008346 1.5e-89 333.6 288 54.5
FvH4_7g25140 Fragaria vesca HOM05D006653 ORTHO05D008346 3.4e-89 332.4 209 77.0
Phvul.001G246100 Phaseolus vulgaris HOM05D006653 ORTHO05D008346 1.7e-88 330.1 279 54.8
Eucgr.G03091 Eucalyptus grandis HOM05D006653 ORTHO05D008346 6.4e-88 328.2 262 59.5
Thecc.10G010700 Theobroma cacao HOM05D006653 ORTHO05D008346 6.4e-88 328.2 276 56.5
Ca_15156_v3 Cicer arietinum L. HOM05D006653 ORTHO05D008346 1.1e-87 327.4 276 54.7
Cc02_g06010 Coffea canephora HOM05D006653 ORTHO05D008346 1.1e-87 327.4 273 54.9
PSO339G4279 Papaver somniferum HOM05D006653 ORTHO05D008346 1.4e-87 327.0 274 55.8
Sabra08G0054400 Salix brachista HOM05D006653 ORTHO05D008346 2.4e-87 326.2 341 50.7
Gorai.011G290500 Gossypium raimondii HOM05D006653 ORTHO05D008346 7.1e-87 324.7 273 54.2
PSO801G0584 Papaver somniferum HOM05D006653 ORTHO05D008346 9.3e-87 324.3 274 55.5
THA.LOC104810122 Tarenaya hassleriana HOM05D006653 ORTHO05D008346 1.2e-86 323.9 279 54.5
Peaxi162Scf01149g00326 Petunia axillaris HOM05D006653 ORTHO05D008346 1.6e-86 323.6 280 54.6
Oeu001415.1 Olea europaea HOM05D006653 ORTHO05D008346 2.7e-86 322.8 276 55.4
vmacro06946 Vaccinium macrocarpon HOM05D006653 ORTHO05D008346 4.6e-86 322.0 312 53.2
AL4G38130 Arabidopsis lyrata HOM05D006653 ORTHO05D008346 7.8e-86 321.2 274 54.4
Migut.F00634 Erythranthe guttata HOM05D006653 ORTHO05D008346 3.9e-85 318.9 278 54.7
SGA_v2.0_scaffold60G20961 Striga asiatica HOM05D006653 ORTHO05D008346 5.1e-85 318.5 277 56.0
CAN.G203.2 Capsicum annuum HOM05D006653 ORTHO05D008346 7.3e-84 314.7 266 56.0
Carub.0004s2256 Capsella rubella HOM05D006653 ORTHO05D008346 1.3e-83 313.9 263 54.8
Nitab4.5_0003391g0090 Nicotiana tabacum HOM05D006653 ORTHO05D008346 1.6e-83 313.5 260 56.2
Thhalv10017062m.g Eutrema salsugineum HOM05D006653 ORTHO05D008346 2.8e-83 312.8 263 54.4
Rhsim03G0147300 Rhododendron simsii HOM05D006653 ORTHO05D008346 8.1e-83 311.2 351 47.3
Nitab4.5_0000789g0140 Nicotiana tabacum HOM05D006653 ORTHO05D008346 1.1e-82 310.8 280 53.6
Sp4g22650 Schrenkiella parvula HOM05D006653 ORTHO05D008346 2.4e-82 309.7 263 53.2
Aa31LG5G19250 Aethionema arabicum HOM05D006653 ORTHO05D008346 3.1e-82 309.3 279 52.0
MSTRG.27303 Avicennia marina HOM05D006653 ORTHO05D008346 3.1e-82 309.3 278 53.6
Solyc05g052460.3 Solanum lycopersicum HOM05D006653 ORTHO05D008346 6.9e-82 308.1 258 57.0
HanXRQChr17g0560871 Helianthus annuus HOM05D006653 ORTHO05D008346 9.0e-82 307.8 276 52.9
Sopen05g030990 Solanum pennellii HOM05D006653 ORTHO05D008346 9.0e-82 307.8 259 57.1
SalBow3G2417 Salvia bowleyana HOM05D006653 ORTHO05D008346 1.2e-81 307.4 276 53.6
BcaC02g12146 Brassica carinata HOM05D006653 ORTHO05D008346 3.4e-81 305.8 278 51.1
Dinv21781 Davidia involucrata HOM05D006653 ORTHO05D008346 7.6e-81 304.7 228 64.5
Lsat_1_v5_gn_8_12960 Lactuca sativa HOM05D006653 ORTHO05D008346 2.2e-80 303.1 266 53.4
C04p07070 Brassica napus HOM05D006653 ORTHO05D008346 8.4e-80 301.2 279 50.9
ECA233G2660 Erigeron canadensis HOM05D006653 ORTHO05D008346 2.4e-79 299.7 251 55.8
A05p06130 Brassica napus HOM05D006653 ORTHO05D008346 2.7e-78 296.2 278 50.7
Duzib114G1011 Durio zibethinus HOM05D006653 ORTHO05D008346 2.7e-78 296.2 290 50.0
EL10Ac2g04898 Beta vulgaris HOM05D006653 ORTHO05D008346 4.6e-78 295.4 262 53.1
PGR142G3637 Punica granatum HOM05D006653 ORTHO05D008346 6.0e-78 295.0 240 57.1
SalBow3G2982 Salvia bowleyana HOM05D006653 ORTHO05D008346 7.9e-78 294.7 298 49.7
BcaB02g09031 Brassica carinata HOM05D006653 ORTHO05D008346 8.7e-77 291.2 278 50.4
TPR.G27742 Trifolium pratense HOM05D006653 ORTHO05D008346 1.1e-76 290.8 370 42.7
Sc10g0002660 Simmondsia chinensis HOM05D006653 ORTHO05D008346 1.9e-76 290.0 259 52.5
arahy.Tifrunner.gnm1.ann1.CC0JZ8 Arachis hypogaea HOM05D006653 ORTHO05D008346 7.4e-76 288.1 333 42.6
Lsat_1_v5_gn_9_60841 Lactuca sativa HOM05D006653 ORTHO05D008346 1.8e-74 283.5 264 51.9
ATR0174G059 Amborella trichopoda HOM05D006653 ORTHO05D008346 6.9e-74 281.6 263 49.4
ECA232G4592 Erigeron canadensis HOM05D006653 ORTHO05D008346 9.9e-73 277.7 292 46.9
CANSAT56G3810 Cannabis sativa HOM05D006653 ORTHO05D008346 2.9e-72 276.2 214 62.1
BolC4t22332H Brassica oleracea HOM05D006653 ORTHO05D008346 3.8e-72 275.8 254 50.4
Ah.10g036190 Amaranthus hybridus HOM05D006653 ORTHO05D008346 1.4e-71 273.9 257 49.8
BraA05t19578Z Brassica rapa HOM05D006653 ORTHO05D008346 2.7e-70 269.6 269 48.0
ClCG07G004590 Citrullus lanatus HOM05D006653 ORTHO05D008346 2.7e-70 269.6 285 50.5
HPP92_000719 Vanilla planifolia HOM05D006653 ORTHO05D008346 6.0e-70 268.5 243 53.1
MELO3C034224.2 Cucumis melo HOM05D006653 ORTHO05D008346 1.0e-69 267.7 214 59.8
Hund13903 Selenicereus undatus HOM05D006653 ORTHO05D008346 1.3e-69 267.3 242 51.7
Manes.10G008100 Manihot esculenta HOM05D006653 ORTHO05D008346 1.9e-68 263.5 213 60.6
CARHR135400 Cardamine hirsuta HOM05D006653 ORTHO05D008346 2.8e-67 259.6 214 57.5
Psat5g130600 Pisum sativum HOM05D006653 ORTHO05D008346 6.2e-67 258.5 209 57.9
HanXRQChr09g0253161 Helianthus annuus HOM05D006653 ORTHO05D008346 3.1e-66 256.1 263 47.9
DCAR_011848 Daucus carota HOM05D006653 ORTHO05D008346 9.0e-66 254.6 209 57.4
AUR62022948 Chenopodium quinoa HOM05D006653 ORTHO05D008346 1.3e-64 250.8 240 50.4
AT2G40316 Arabidopsis thaliana HOM05D006653 ORTHO05D008346 1.7e-64 250.4 214 54.7
Glyma.11G233000 Glycine max HOM05D006653 ORTHO05D008346 1.4e-63 247.3 225 53.3
Gohir.D10G250100 Gossypium hirsutum HOM05D006653 ORTHO05D008346 2.5e-63 246.5 207 54.6
Gohir.A10G238200 Gossypium hirsutum HOM05D006653 ORTHO05D008346 5.5e-63 245.4 207 54.1
arahy.Tifrunner.gnm1.ann1.WF4WBF Arachis hypogaea HOM05D006653 ORTHO05D008346 4.6e-62 242.3 283 43.8
Atru.chr12.104 Acer truncatum HOM05D006653 ORTHO05D008346 1.0e-61 241.1 200 58.5
VMungo1383G0363 Vigna mungo HOM05D006653 ORTHO05D008346 3.9e-61 239.2 338 39.9
PGSC0003DMG400027171 Solanum tuberosum HOM05D006653 ORTHO05D008346 5.3e-58 228.8 258 45.3
Lj8C62G17 Lonicera japonica HOM05D006653 ORTHO05D008346 1.4e-55 220.7 195 56.9
PGR142G1681 Punica granatum HOM05D006653 ORTHO05D008346 2.3e-53 213.4 185 56.2
MBI03_g37948_MAGBIO Magnolia biondii HOM05D006653 ORTHO05D008346 4.3e-52 209.1 351 36.2
Pp3c11_970 Physcomitrium patens HOM05D006653 ORTHO05D008346 4.1e-50 202.6 244 42.2
AUR62012309 Chenopodium quinoa HOM05D000043 ORTHO05D003538 1.7e-48 197.2 232 44.4
Zm00001eb013720 Zea mays HOM05D006653 ORTHO05D008346 6.5e-48 195.3 198 47.0
Pp3c2_28750 Physcomitrium patens HOM05D006653 ORTHO05D008346 7.2e-47 191.8 243 40.7
Mapoly0095s0003 Marchantia polymorpha HOM05D006653 ORTHO05D008346 1.0e-45 188.0 237 39.2
Dinv10585 Davidia involucrata HOM05D006653 ORTHO05D008346 5.7e-44 182.2 145 59.3
CDE06G2038 Ceratophyllum demersum HOM05D006653 ORTHO05D008346 6.3e-43 178.7 213 44.1
COL.COLO4_25792 Corchorus olitorius HOM05D006653 ORTHO05D008346 5.3e-34 149.1 180 43.9
Cpa.g.sc19.127 Carica papaya HOM05D006653 ORTHO05D008346 2.9e-32 143.3 125 54.4
AagrBONN_evm.TU.Sc2ySwM_362.1315 Anthoceros agrestis HOM05D006653 ORTHO05D008346 1.4e-29 134.4 162 40.1
SMO203G0248 Selaginella moellendorffii HOM05D006653 ORTHO05D008346 3.0e-29 133.3 186 37.6
HanXRQChr08g0221951 Helianthus annuus HOM05D006653 ORTHO05D008346 4.4e-20 102.8 165 37.0
Manes.07G134901 Manihot esculenta HOM05D006653 ORTHO05D008346 6.3e-19 99.0 150 38.0
SEGI_38425 Sequoiadendron giganteum HOM05D006653 ORTHO05D008346 1.9e-15 87.4 78 42.3
Manes.07G074522 Manihot esculenta HOM05D006653 ORTHO05D008346 3.2e-15 86.7 100 48.0
SHI28813 Sapria himalayana HOM05D006653 ORTHO05D008346 4.0e-13 79.7 256 25.4
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.0e-08 65.1 73 46.6


User provided reference genes

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