Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 0.0e+00 1488.0 718 100.0
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 0.0e+00 1285.4 720 86.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1281.5 744 84.4
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1280.4 733 85.4
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1256.1 760 82.1
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 0.0e+00 1161.4 728 77.7
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 0.0e+00 1153.3 732 77.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 0.0e+00 1147.1 732 77.0
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.8e-304 1047.0 665 79.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 3.7e-294 1014.6 726 68.0
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 2.1e-281 972.2 712 65.4
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.4e-279 964.9 693 67.2
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 7.6e-279 963.8 736 64.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.2e-277 958.4 717 65.0
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 7.8e-276 953.7 727 63.8
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.3e-274 947.2 721 64.8
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.7e-273 944.5 687 66.2
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 3.1e-272 941.8 726 63.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 6.8e-272 940.6 759 61.0
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 2.0e-271 939.1 676 66.3
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 9.9e-271 936.8 715 65.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.3e-270 936.4 728 63.6
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 4.6e-268 927.9 721 63.5
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.7e-267 926.0 748 61.2
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 8.1e-265 917.1 723 62.4
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 8.1e-265 917.1 687 64.9
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.1e-264 916.8 722 61.6
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.8e-264 916.0 734 61.9
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 2.6e-263 912.1 721 61.3
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 7.6e-263 910.6 686 64.3
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.9e-262 907.9 715 64.3
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 8.4e-262 907.1 730 61.6
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.9e-261 906.0 731 61.8
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.4e-261 905.6 688 63.8
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 4.2e-261 904.8 726 61.0
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.4e-261 904.4 688 63.7
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 9.3e-261 903.7 728 61.7
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.1e-260 902.5 688 63.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 6.0e-260 901.0 696 63.1
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 7.9e-260 900.6 727 61.2
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 2.3e-259 899.0 717 61.9
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.9e-259 898.3 729 62.3
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.1e-258 896.7 719 62.3
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.8e-256 889.4 693 62.8
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 2.4e-256 889.0 724 61.3
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 6.9e-256 887.5 723 61.7
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.2e-255 886.7 729 60.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.0e-255 885.9 723 61.5
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.0e-255 885.9 730 61.4
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 7.6e-255 884.0 726 59.6
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 7.6e-255 884.0 723 61.3
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.9e-254 882.1 673 64.0
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 4.9e-254 881.3 685 63.9
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.5e-252 875.2 699 60.1
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.0e-252 874.4 699 60.1
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.0e-251 873.6 699 59.9
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 5.1e-251 871.3 671 63.3
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.9e-250 869.4 672 62.9
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 3.3e-250 868.6 671 62.9
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 7.4e-250 867.5 606 68.3
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 4.8e-249 864.8 710 59.6
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 4.8e-249 864.8 727 59.8
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.5e-247 859.8 672 61.8
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.3e-246 856.7 705 59.3
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 6.5e-246 854.4 682 61.3
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 4.2e-245 851.7 732 57.4
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 5.5e-245 851.3 683 61.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.5e-242 843.2 729 56.9
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 6.3e-241 837.8 732 58.2
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 8.2e-241 837.4 681 59.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.4e-240 836.6 743 57.2
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.8e-240 836.3 684 59.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 9.0e-240 833.9 680 58.8
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.4e-239 832.0 685 59.3
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 2.2e-238 829.3 743 56.7
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.6e-236 823.2 727 56.3
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.3e-235 820.1 721 56.3
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.9e-234 816.2 892 50.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.5e-234 815.8 728 55.2
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.3e-234 815.1 631 63.1
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.1e-232 808.9 691 59.0
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 4.1e-232 808.5 615 64.2
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 4.5e-231 805.1 593 66.8
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.8e-230 802.0 691 57.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.0e-227 793.9 749 55.3
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.3e-227 792.7 681 56.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.9e-227 792.0 680 56.3
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.1e-227 791.6 690 55.8
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 3.3e-226 788.9 696 54.5
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.7e-225 786.6 682 55.9
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.8e-225 785.8 586 64.8
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.8e-225 785.8 681 57.6
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 8.2e-225 784.3 682 56.2
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 5.3e-224 781.6 676 56.2
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.5e-223 780.0 679 55.5
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 2.6e-223 779.2 680 55.7
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-222 775.8 678 55.3
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.5e-222 774.6 679 56.1
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.4e-221 773.5 733 53.9
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 3.2e-221 772.3 727 53.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 9.4e-221 770.8 680 55.0
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-220 770.0 680 54.9
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.6e-220 770.0 680 54.9
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.9e-219 765.4 730 53.2
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.1e-218 763.8 737 52.8
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-218 763.1 732 53.8
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 5.3e-216 755.0 681 54.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.0e-216 754.6 680 55.0
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 9.1e-216 754.2 776 51.4
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-213 747.3 728 52.9
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.5e-213 746.9 666 56.5
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.9e-213 746.5 676 58.6
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.0e-212 741.1 681 53.9
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 8.0e-212 741.1 750 51.3
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.0e-210 736.5 679 53.2
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 4.4e-210 735.3 665 55.6
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.8e-208 729.9 524 67.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.1e-208 728.8 681 53.7
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 7.0e-208 728.0 694 54.3
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.5e-207 725.7 692 55.1
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 5.5e-205 718.4 734 49.6
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.1e-200 704.1 681 51.2
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 7.0e-200 701.4 650 54.3
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-198 697.6 723 51.3
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 7.2e-197 691.4 706 50.8
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.6e-188 663.7 556 60.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.8e-184 650.2 679 49.0
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.2e-175 620.9 687 48.5
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 3.0e-174 616.3 533 57.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.5e-173 614.0 673 48.7
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 3.3e-173 612.8 726 46.1
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.3e-150 537.7 544 50.0
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 4.6e-135 486.1 342 65.8
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 3.8e-129 466.5 428 51.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 2.5e-125 453.8 385 57.1
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.8e-115 421.0 291 67.4
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.2e-113 414.1 388 55.4
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 2.6e-106 390.6 398 48.7
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 6.1e-103 379.4 360 50.3
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 6.1e-103 379.4 214 81.8
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.8e-102 377.9 464 45.3
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 6.1e-95 352.8 564 36.9
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 5.5e-88 329.7 314 49.0
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 5.2e-86 323.2 567 35.3
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.8e-79 300.8 544 34.0
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.5e-74 283.9 329 47.7
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 3.1e-62 244.2 158 70.3
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 7.5e-61 239.6 209 57.9
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.6e-55 221.9 247 48.6
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 5.2e-54 216.9 141 71.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-51 209.1 221 49.3
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 3.6e-47 194.1 122 66.4
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 5.2e-46 190.3 228 45.6
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.2e-43 181.0 117 69.2
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 5.1e-41 173.7 177 49.2
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.1e-41 173.7 384 31.5
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 8.7e-41 172.9 207 47.3
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 3.2e-35 154.5 101 68.3
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 3.2e-35 154.5 101 68.3
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 3.2e-35 154.5 101 68.3
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-33 148.7 135 51.9
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.4e-30 138.3 271 35.1
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 9.9e-29 132.9 251 34.7
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.3e-25 122.5 253 31.6
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.8e-22 112.1 180 36.1
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.5e-19 100.5 73 63.0
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-18 98.6 141 36.2
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 4.6e-18 97.4 236 31.8
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.1e-17 94.0 117 41.9
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.1e-15 88.6 59 67.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 5.8e-13 80.5 54 66.7
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.1e-11 76.3 43 72.1
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.1e-11 76.3 43 72.1


User provided reference genes

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