Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0370661 Rosa chinensis HOM05D006437 ORTHO05D007973 3.9e-37 157.5 75 100.0
FAN27G3274 Fragaria x ananassa HOM05D006437 ORTHO05D007973 4.2e-31 137.5 73 86.3
FAN15G1984 Fragaria x ananassa HOM05D006437 ORTHO05D007973 1.6e-30 135.6 73 84.9
CANSAT78G0649 Cannabis sativa HOM05D006437 ORTHO05D007973 1.4e-29 132.5 78 80.8
CiPaw.03G068600 Carya illinoinensis HOM05D006437 ORTHO05D007973 1.4e-29 132.5 78 80.8
Nitab4.5_0004399g0060 Nicotiana tabacum HOM05D006437 ORTHO05D007973 1.8e-29 132.1 69 87.0
Aqoxy7G00638 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 2.3e-29 131.7 78 76.9
AUR62023192 Chenopodium quinoa HOM05D006437 ORTHO05D007973 5.1e-29 130.6 75 78.7
CSS0043713 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 6.7e-29 130.2 71 81.7
QL11p004106 Quercus lobata HOM05D006437 ORTHO05D007973 8.8e-29 129.8 77 80.5
Aqoxy5G01129 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 1.1e-28 129.4 78 74.4
AUR62023239 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.1e-28 129.4 75 77.3
Phvul.001G231901 Phaseolus vulgaris HOM05D006437 ORTHO05D007973 1.1e-28 129.4 75 78.7
Solyc02g091390.3 Solanum lycopersicum HOM05D006437 ORTHO05D007973 1.1e-28 129.4 69 84.1
Sopen02g036010 Solanum pennellii HOM05D006437 ORTHO05D007973 1.1e-28 129.4 69 84.1
PGSC0003DMG400030646 Solanum tuberosum HOM05D006437 ORTHO05D007973 1.1e-28 129.4 69 84.1
Ciclev10013249m.g Citrus clementina HOM05D006437 ORTHO05D007973 1.5e-28 129.0 78 76.9
Nn3g18216 Nelumbo nucifera HOM05D006437 ORTHO05D007973 2.0e-28 128.6 78 78.2
BcaC04g18789 Brassica carinata HOM05D006437 ORTHO05D007973 2.6e-28 128.3 69 81.2
Ca_08164_v3 Cicer arietinum L. HOM05D006437 ORTHO05D007973 2.6e-28 128.3 69 84.1
Lsat_1_v5_gn_2_81461 Lactuca sativa HOM05D006437 ORTHO05D007973 2.6e-28 128.3 76 78.9
Glyma.18G038851 Glycine max HOM05D006437 ORTHO05D007973 3.3e-28 127.9 75 78.7
Medtr3g067715 Medicago truncatula HOM05D006437 ORTHO05D007973 3.3e-28 127.9 75 77.3
SalBow7G1639 Salvia bowleyana HOM05D006437 ORTHO05D007973 3.3e-28 127.9 69 84.1
DCAR_015248 Daucus carota HOM05D006437 ORTHO05D007973 4.4e-28 127.5 69 82.6
Migut.L00468 Erythranthe guttata HOM05D006437 ORTHO05D007973 4.4e-28 127.5 69 85.5
TPR.G15845 Trifolium pratense HOM05D006437 ORTHO05D007973 4.4e-28 127.5 69 81.2
ECA238G0319 Erigeron canadensis HOM05D006437 ORTHO05D007973 5.7e-28 127.1 76 75.0
HanXRQChr07g0193741 Helianthus annuus HOM05D006437 ORTHO05D007973 5.7e-28 127.1 74 82.4
Medtr3g067720 Medicago truncatula HOM05D006437 ORTHO05D007973 5.7e-28 127.1 69 79.7
PSO017G0604 Papaver somniferum HOM05D006437 ORTHO05D007973 5.7e-28 127.1 78 71.8
PSO478G4394 Papaver somniferum HOM05D006437 ORTHO05D007973 5.7e-28 127.1 78 71.8
GSVIVG01030860001 Vitis vinifera HOM05D006437 ORTHO05D007973 5.7e-28 127.1 78 78.2
MELO3C020290.2 Cucumis melo HOM05D006437 ORTHO05D007973 7.4e-28 126.7 78 75.6
Prupe.3G158900 Prunus persica HOM05D006437 ORTHO05D007973 7.4e-28 126.7 67 83.6
TAR371G0259 Trochodendron aralioides HOM05D006437 ORTHO05D007973 7.4e-28 126.7 69 84.1
TAR371G1269 Trochodendron aralioides HOM05D006437 ORTHO05D007973 7.4e-28 126.7 69 84.1
Glyma.11G218400 Glycine max HOM05D006437 ORTHO05D007973 9.7e-28 126.3 75 77.3
Hma1.2p1_0832F.1_g225650 Hydrangea macrophylla HOM05D006437 ORTHO05D007973 9.7e-28 126.3 68 82.4
TAR629G2663 Trochodendron aralioides HOM05D006437 ORTHO05D007973 9.7e-28 126.3 78 78.2
ClCG05G010950 Citrullus lanatus HOM05D006437 ORTHO05D007973 1.3e-27 125.9 78 75.6
FvH4_5g32381 Fragaria vesca HOM05D006437 ORTHO05D007973 1.3e-27 125.9 66 86.4
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 1.3e-27 125.9 66 84.8
Lalb_Chr10g0104491 Lupinus albus HOM05D006437 ORTHO05D007973 1.3e-27 125.9 75 81.3
PSO017G3771 Papaver somniferum HOM05D006437 ORTHO05D007973 1.7e-27 125.6 71 74.6
PSO478G0303 Papaver somniferum HOM05D006437 ORTHO05D007973 1.7e-27 125.6 71 74.6
Nn4g24140 Nelumbo nucifera HOM05D006437 ORTHO05D007973 2.2e-27 125.2 78 75.6
BcaC05g30279 Brassica carinata HOM05D006437 ORTHO05D007973 2.8e-27 124.8 69 79.7
EL10Ac2g04484 Beta vulgaris HOM05D006437 ORTHO05D007973 3.7e-27 124.4 69 78.3
Cfa007843 Carpinus fangiana HOM05D006437 ORTHO05D007973 3.7e-27 124.4 75 80.0
Cc07_g08170 Coffea canephora HOM05D006437 ORTHO05D007973 3.7e-27 124.4 69 81.2
Eucgr.F02822 Eucalyptus grandis HOM05D006437 ORTHO05D007973 3.7e-27 124.4 78 76.9
Zm00001eb158640 Zea mays HOM05D006437 ORTHO05D007973 3.7e-27 124.4 69 78.3
MD09G1261500 Malus domestica HOM05D006437 ORTHO05D007973 4.8e-27 124.0 69 82.6
Sed0002962 Sechium edule HOM05D006437 ORTHO05D007973 4.8e-27 124.0 74 75.7
AL3G12980 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 8.2e-27 123.2 69 79.7
AT3G03341 Arabidopsis thaliana HOM05D006437 ORTHO05D007973 8.2e-27 123.2 69 79.7
Carub.0003s0252 Capsella rubella HOM05D006437 ORTHO05D007973 8.2e-27 123.2 69 79.7
CARHR077390 Cardamine hirsuta HOM05D006437 ORTHO05D007973 8.2e-27 123.2 69 79.7
Aa31LG5G13890 Aethionema arabicum HOM05D006437 ORTHO05D007973 1.1e-26 122.9 69 79.7
Carub.0006s1569 Capsella rubella HOM05D006437 ORTHO05D007973 1.1e-26 122.9 69 78.3
Haze_14223 Corylus avellana HOM05D006437 ORTHO05D007973 1.1e-26 122.9 75 77.3
Lj6g0018768 Lotus japonicus HOM05D006437 ORTHO05D007973 1.1e-26 122.9 75 76.0
Sp3g02370 Schrenkiella parvula HOM05D006437 ORTHO05D007973 1.1e-26 122.9 69 78.3
AL6G28540 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 76.8
BcaC09g47742 Brassica carinata HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 78.3
A06p26360 Brassica napus HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 78.3
BNapus_Darmor_BZH_scaffold_162p00120 Brassica napus HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 78.3
BNapus_Darmor_BZH_scaffold_78p00110 Brassica napus HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 78.3
BolC1t05835H Brassica oleracea HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 78.3
CSS0019264 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 79.7
AUR62023238 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 76.8
Thhalv10022211m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 1.8e-26 122.1 69 78.3
A10p21920 Brassica napus HOM05D006437 ORTHO05D007973 2.4e-26 121.7 67 79.1
Manes.02G074600 Manihot esculenta HOM05D006437 ORTHO05D007973 2.4e-26 121.7 75 74.7
Os01g0644200 Oryza sativa ssp. japonica HOM05D006437 ORTHO05D007973 2.4e-26 121.7 69 75.4
Thecc.04G121100 Theobroma cacao HOM05D006437 ORTHO05D007973 2.4e-26 121.7 75 74.7
C09p59670 Brassica napus HOM05D006437 ORTHO05D007973 3.1e-26 121.3 66 80.3
BolC9t58806H Brassica oleracea HOM05D006437 ORTHO05D007973 3.1e-26 121.3 66 80.3
BraA10t44251Z Brassica rapa HOM05D006437 ORTHO05D007973 3.1e-26 121.3 66 80.3
Cpa.g.sc604.3 Carica papaya HOM05D006437 ORTHO05D007973 3.1e-26 121.3 69 76.8
Thhalv10015148m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 3.1e-26 121.3 69 76.8
CARHR195740 Cardamine hirsuta HOM05D006437 ORTHO05D007973 5.3e-26 120.6 69 75.4
AUR62023191 Chenopodium quinoa HOM05D006437 ORTHO05D007973 5.3e-26 120.6 69 75.4
Potri.017G128600 Populus trichocarpa HOM05D006437 ORTHO05D007973 7.0e-26 120.2 78 73.1
BcaC09g47741 Brassica carinata HOM05D006437 ORTHO05D007973 9.1e-26 119.8 69 76.8
Dinv19010 Davidia involucrata HOM05D006437 ORTHO05D007973 1.2e-25 119.4 67 79.1
BraA01t04584Z Brassica rapa HOM05D006437 ORTHO05D007973 2.0e-25 118.6 69 76.8
PGR042G3666 Punica granatum HOM05D006437 ORTHO05D007973 2.0e-25 118.6 78 70.5
SMO111G0099 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.7e-24 115.5 69 72.5
THA.LOC104820840 Tarenaya hassleriana HOM05D006437 ORTHO05D007973 2.2e-24 115.2 69 72.5
AL288U10020 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 3.8e-24 114.4 69 76.8
Mapoly0046s0059 Marchantia polymorpha HOM05D006437 ORTHO05D007973 8.5e-24 113.2 69 65.2
Pp3c24_9690 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.9e-23 112.1 69 69.6
Lalb_Chr10g0104501 Lupinus albus HOM05D006437 ORTHO05D007973 3.2e-23 111.3 76 68.4
Pp3c23_9530 Physcomitrium patens HOM05D006437 ORTHO05D007973 7.2e-23 110.2 69 68.1
SMO111G0160 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 7.2e-23 110.2 69 69.6
SMO111G0173 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 7.2e-23 110.2 69 69.6
SMO293G0011 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 7.2e-23 110.2 69 69.6
Mapoly0046s0058 Marchantia polymorpha HOM05D006437 ORTHO05D007973 1.6e-22 109.0 69 68.1
CsaV3_1G027840 Cucumis sativus L. HOM05D006437 ORTHO05D007973 2.1e-22 108.6 62 74.2
CsaV3_3G021640 Cucumis sativus L. HOM05D006437 ORTHO05D007973 2.1e-22 108.6 62 74.2
Pp3c19_5460 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.6e-22 107.8 69 65.2
Pp3c19_5500 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.6e-22 107.8 69 65.2
Pp3c8_12730 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.6e-22 107.8 69 68.1
Pp3c8_12731 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.6e-22 107.8 69 68.1
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 4.7e-22 107.5 58 79.3
Pp3c19_9840 Physcomitrium patens HOM05D006437 ORTHO05D007973 4.7e-22 107.5 69 63.8
Pp3c21_13210 Physcomitrium patens HOM05D006437 ORTHO05D007973 8.0e-22 106.7 69 65.2
SMO111G0149 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 8.0e-22 106.7 69 66.7
MELO3C020291.2 Cucumis melo HOM05D006437 ORTHO05D007973 1.0e-21 106.3 69 72.5
Aqoxy7G00636 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 3.3e-20 101.3 62 69.4
Pp3c4_12160 Physcomitrium patens HOM05D006437 ORTHO05D007973 5.7e-20 100.5 69 58.0
Peaxi162Scf00118g00018 Petunia axillaris HOM05D006437 ORTHO05D007973 7.4e-20 100.1 57 78.9
SEGI_27045 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 2.2e-19 98.6 69 59.4
SEGI_20637 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 8.2e-19 96.7 69 58.0
Rhsim08G0086000 Rhododendron simsii HOM05D006437 ORTHO05D007973 1.8e-18 95.5 62 69.4
Mapoly0009s0147 Marchantia polymorpha HOM05D006437 ORTHO05D007973 9.1e-18 93.2 67 53.7
TAR371G0835 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.2e-16 88.6 47 83.0
SEGI_23307 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 5.0e-16 87.4 58 69.0
TAR371G0317 Trochodendron aralioides HOM05D006437 ORTHO05D007973 7.2e-15 83.6 46 80.4
Cre03.g207152 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 5.5e-07 57.4 69 42.0
Cre13.g575701 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 1.2e-06 56.2 69 37.7


User provided reference genes

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