Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 1.1e-41 172.9 89 100.0
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 1.5e-35 152.5 87 82.8
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 7.4e-35 150.2 79 93.7
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.2e-34 148.7 77 93.5
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 8.2e-34 146.7 76 94.7
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 8.2e-34 146.7 76 94.7
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 1.1e-33 146.4 86 81.4
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 3.1e-33 144.8 93 78.5
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 4.1e-33 144.4 86 80.2
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 1.2e-32 142.9 80 83.8
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 3.5e-32 141.4 79 84.8
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 4.5e-32 141.0 86 80.2
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 5.9e-32 140.6 83 81.9
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 7.7e-32 140.2 80 81.2
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 7.7e-32 140.2 80 81.2
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 7.7e-32 140.2 85 77.6
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 2.2e-31 138.7 80 80.0
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 2.2e-31 138.7 86 75.6
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 2.9e-31 138.3 83 78.3
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 2.9e-31 138.3 85 76.5
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 2.9e-31 138.3 86 76.7
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 3.8e-31 137.9 83 77.1
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 5.0e-31 137.5 86 76.7
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 6.5e-31 137.1 86 75.6
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 6.5e-31 137.1 86 77.9
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.1e-30 136.3 86 75.6
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.1e-30 136.3 86 73.3
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 1.5e-30 136.0 78 82.1
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 1.5e-30 136.0 86 75.6
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 1.5e-30 136.0 86 79.1
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 1.5e-30 136.0 80 78.8
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 1.9e-30 135.6 88 72.7
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.9e-30 135.6 86 76.7
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 2.5e-30 135.2 80 78.8
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 2.5e-30 135.2 80 78.8
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 2.5e-30 135.2 78 80.8
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.5e-30 135.2 78 80.8
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.5e-30 135.2 78 80.8
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 3.2e-30 134.8 88 72.7
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 3.2e-30 134.8 87 74.7
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 3.2e-30 134.8 78 82.1
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 3.2e-30 134.8 86 76.7
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 3.2e-30 134.8 78 84.6
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 4.2e-30 134.4 84 81.0
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 4.2e-30 134.4 78 82.1
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 4.2e-30 134.4 78 79.5
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 5.5e-30 134.0 88 72.7
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 5.5e-30 134.0 89 75.3
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 5.5e-30 134.0 88 71.6
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 7.2e-30 133.7 88 73.9
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 9.4e-30 133.3 81 77.8
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 9.4e-30 133.3 88 72.7
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 9.4e-30 133.3 88 72.7
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 9.4e-30 133.3 88 72.7
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 9.4e-30 133.3 86 75.6
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 9.4e-30 133.3 86 76.7
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 9.4e-30 133.3 88 73.9
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 9.4e-30 133.3 89 73.0
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 1.2e-29 132.9 88 71.6
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 1.2e-29 132.9 81 77.8
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 1.2e-29 132.9 88 73.9
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 2.1e-29 132.1 88 71.6
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 2.1e-29 132.1 88 71.6
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 2.1e-29 132.1 83 73.5
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 2.1e-29 132.1 81 77.8
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 2.1e-29 132.1 91 72.5
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 2.1e-29 132.1 88 71.6
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 2.1e-29 132.1 81 75.3
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 2.7e-29 131.7 88 69.3
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.7e-29 131.7 86 73.3
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.7e-29 131.7 78 79.5
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 3.6e-29 131.3 88 71.6
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 4.7e-29 131.0 88 68.2
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 4.7e-29 131.0 88 73.9
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 6.1e-29 130.6 86 76.7
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 6.1e-29 130.6 83 77.1
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 6.1e-29 130.6 81 77.8
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 8.0e-29 130.2 89 74.2
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 8.0e-29 130.2 78 78.2
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 1.0e-28 129.8 81 77.8
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 1.4e-28 129.4 78 76.9
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 1.4e-28 129.4 94 71.3
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 1.4e-28 129.4 78 79.5
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 1.4e-28 129.4 83 74.7
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 2.3e-28 128.6 78 78.2
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 3.0e-28 128.3 86 72.1
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 5.2e-28 127.5 90 71.1
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 5.2e-28 127.5 78 76.9
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 5.2e-28 127.5 78 78.2
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 6.7e-28 127.1 73 82.2
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 6.7e-28 127.1 79 74.7
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 6.7e-28 127.1 89 73.0
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 8.8e-28 126.7 90 68.9
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 1.2e-27 126.3 88 69.3
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 2.0e-27 125.6 75 80.0
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 2.6e-27 125.2 87 70.1
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 5.7e-27 124.0 86 67.4
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 5.7e-27 124.0 88 69.3
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 7.5e-27 123.6 87 67.8
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 7.5e-27 123.6 88 68.2
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 7.5e-27 123.6 84 75.0
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 1.7e-26 122.5 76 77.6
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 2.8e-26 121.7 73 76.7
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.8e-26 121.7 85 67.1
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 3.7e-26 121.3 80 68.8
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 4.8e-26 120.9 76 76.3
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 4.8e-26 120.9 86 68.6
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 4.8e-26 120.9 76 77.6
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.3e-26 120.6 85 65.9
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 8.3e-26 120.2 75 76.0
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 1.8e-25 119.0 82 70.7
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 2.4e-25 118.6 81 70.4
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 9.1e-25 116.7 75 73.3
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 1.2e-24 116.3 79 72.2
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 1.2e-24 116.3 76 75.0
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 1.6e-24 115.9 76 73.7
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 2.0e-24 115.5 81 67.9
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 2.7e-24 115.2 79 65.8
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 2.7e-24 115.2 81 67.9
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 1.0e-23 113.2 88 65.9
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 1.0e-23 113.2 93 66.7
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 1.3e-23 112.8 75 70.7
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 3.8e-23 111.3 71 74.6
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 1.1e-22 109.8 70 74.3
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.5e-22 108.6 74 67.6
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 5.5e-22 107.5 75 68.0
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 1.2e-21 106.3 78 62.8
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 1.6e-21 105.9 78 61.5
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 1.8e-20 102.4 80 62.5
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 3.0e-20 101.7 74 62.2
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 2.0e-19 99.0 71 67.6
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 3.4e-19 98.2 74 63.5
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 5.7e-19 97.4 63 73.0
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 4.8e-18 94.4 70 64.3
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.1e-17 93.2 63 74.6
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 1.1e-17 93.2 63 74.6
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 1.8e-17 92.4 61 70.5
Pp3c24_20710 Physcomitrium patens HOM05D003476 ORTHO05D004057 2.4e-17 92.0 81 56.8
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 3.1e-17 91.7 71 62.0
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 9.1e-17 90.1 67 64.2
MBI16_g28612_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 1.2e-16 89.7 82 56.1
Pp3c8_24950 Physcomitrium patens HOM05D003476 ORTHO05D004057 1.2e-16 89.7 78 55.1
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.7e-16 88.6 73 61.6
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 3.5e-16 88.2 69 63.8
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 3.5e-16 88.2 69 63.8
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 1.0e-15 86.7 84 50.0
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 3.8e-15 84.7 65 66.2
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 1.1e-14 83.2 61 65.6
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 5.5e-14 80.9 51 74.5
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 2.1e-13 79.0 61 60.7
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 1.8e-12 75.9 41 82.9
AagrBONN_evm.TU.Sc2ySwM_228.5500 Anthoceros agrestis HOM05D003476 ORTHO05D004057 6.8e-12 73.9 76 43.4
MBI14_g06613_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 1.5e-11 72.8 50 68.0
Migut.F01424 Erythranthe guttata HOM05D003476 ORTHO05D004057 5.7e-11 70.9 42 78.6
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 7.5e-11 70.5 42 76.2
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 2.2e-10 68.9 44 70.5
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 6.3e-10 67.4 63 58.7
Hund03462 Selenicereus undatus HOM05D003476 ORTHO05D004057 8.3e-10 67.0 50 62.0
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 2.4e-09 65.5 45 66.7
PRCOL_00000631 Prasinoderma coloniale HOM05D003476 ORTHO05D004057 3.5e-08 61.6 71 49.3
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 4.5e-08 61.2 40 72.5
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 7.8e-08 60.5 85 41.2
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 1.0e-07 60.1 42 69.0
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 3.9e-07 58.2 35 77.1
Medtr8g093950 Medicago truncatula HOM05D003476 ORTHO05D004057 5.0e-07 57.8 43 69.8
Rhsim03G0140200 Rhododendron simsii HOM05D003476 ORTHO05D004057 8.6e-07 57.0 49 55.1
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 5.6e-06 54.3 45 64.4


User provided reference genes

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