Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 0.0e+00 1349.3 701 100.0
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 0.0e+00 1204.5 761 85.2
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 0.0e+00 1203.3 733 87.9
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 0.0e+00 1192.6 734 87.1
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 0.0e+00 1192.2 762 84.3
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 0.0e+00 1159.8 811 78.9
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 6.6e-304 1047.0 707 78.4
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 5.3e-285 984.2 710 74.9
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 3.1e-229 798.9 749 60.7
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.2e-223 780.4 711 62.4
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 4.4e-223 778.5 700 62.7
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 2.4e-221 772.7 662 64.4
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 7.0e-221 771.2 701 61.3
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 3.6e-217 758.8 710 60.8
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.7e-217 758.4 660 64.8
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 6.8e-216 754.6 713 60.0
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.1e-213 745.3 687 62.9
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 3.5e-212 742.3 705 61.0
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 3.5e-212 742.3 705 61.0
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.9e-211 738.8 668 62.9
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 7.3e-210 734.6 694 60.7
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 9.5e-210 734.2 670 63.0
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 3.1e-208 729.2 697 59.5
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 4.0e-208 728.8 690 60.9
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 3.0e-203 712.6 696 59.5
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 5.1e-203 711.8 696 59.6
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 2.5e-202 709.5 700 59.1
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.6e-201 706.8 692 59.4
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.8e-201 706.1 717 59.0
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.7e-201 705.3 697 58.8
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.4e-200 703.7 697 58.7
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 9.9e-199 697.6 695 58.6
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.4e-197 693.7 696 58.5
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.2e-196 690.6 721 56.9
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 2.3e-195 686.4 698 56.7
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 4.3e-194 682.2 734 54.0
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 1.2e-191 674.1 699 56.5
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 9.9e-191 671.0 695 56.7
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 5.4e-189 665.2 679 57.1
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.3e-187 659.8 639 57.9
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 6.6e-187 658.3 674 56.4
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 2.5e-186 656.4 654 57.5
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.0e-183 646.7 670 56.1
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 2.9e-182 642.9 673 53.8
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 5.4e-181 638.6 651 56.2
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 9.3e-181 637.9 704 55.1
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.0e-179 632.9 689 54.4
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 3.9e-179 632.5 549 64.7
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 5.1e-179 632.1 677 55.1
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 5.1e-179 632.1 703 53.8
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.6e-177 625.9 704 54.1
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 5.3e-176 622.1 637 56.8
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 6.9e-176 621.7 698 53.6
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 2.0e-175 620.2 624 59.8
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.4e-175 619.4 634 56.3
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 4.5e-175 619.0 709 52.0
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 7.6e-175 618.2 628 55.3
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.2e-174 616.7 735 50.9
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 8.4e-174 614.8 685 52.3
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.9e-173 613.6 699 52.4
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 9.3e-173 611.3 691 53.4
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.3e-171 607.4 694 53.3
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.9e-171 605.9 657 54.5
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.1e-171 605.5 587 58.4
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 3.8e-166 589.3 711 51.3
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.6e-164 582.4 691 50.5
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.3e-163 580.9 693 50.9
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 2.6e-159 566.6 558 56.5
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 3.4e-159 566.2 578 54.8
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.8e-158 562.8 694 50.0
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 7.1e-157 558.5 694 51.3
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.2e-156 557.8 710 49.3
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 5.1e-155 552.4 802 44.5
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 2.5e-154 550.1 670 51.5
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 9.0e-152 541.6 705 48.9
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.0e-151 540.4 706 47.9
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 5.9e-151 538.9 650 52.0
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 5.0e-150 535.8 691 51.1
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 8.5e-150 535.0 650 51.2
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 2.5e-149 533.5 650 51.2
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.6e-148 529.6 680 48.5
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.5e-146 523.5 654 48.6
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.8e-144 517.3 647 47.9
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 6.9e-144 515.4 658 50.2
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 9.7e-138 495.0 654 47.1
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.1e-136 491.5 652 50.3
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 4.1e-128 463.0 687 44.7
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.6e-127 461.1 677 44.2
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 2.0e-127 460.7 711 45.9
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 1.3e-126 458.0 660 47.4
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 7.2e-125 452.2 740 44.2
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 3.5e-119 433.3 665 45.3
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 2.9e-118 430.3 515 50.5
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.9e-117 427.6 684 44.7
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 2.7e-116 423.7 614 47.7
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 1.0e-115 421.8 547 50.1
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 1.4e-115 421.4 434 59.0
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 5.2e-115 419.5 643 44.2
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.1e-112 411.8 636 44.7
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 9.1e-112 408.7 664 43.2
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 2.7e-111 407.1 628 44.6
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 2.7e-111 407.1 628 44.6
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-110 404.8 528 47.2
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 2.3e-110 404.1 497 51.5
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 2.3e-110 404.1 677 42.1
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.1e-109 401.7 625 44.5
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 6.8e-107 392.5 220 92.3
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 8.3e-105 385.6 595 42.4
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 4.1e-104 383.3 579 45.1
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 3.7e-97 360.1 666 41.1
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.6e-95 354.8 709 39.6
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 1.1e-93 348.6 555 44.0
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 5.2e-91 339.7 291 62.2
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 3.5e-87 327.0 609 41.5
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 1.3e-86 325.1 529 42.3
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 5.4e-80 303.1 189 76.7
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 3.5e-79 300.4 503 43.3
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.1e-67 260.8 265 53.6
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.9e-61 241.5 271 48.0
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 7.6e-58 229.6 164 76.8
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 6.9e-51 206.5 252 46.0
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 3.8e-49 200.7 494 33.0
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.3e-46 192.2 459 33.3
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 4.3e-45 187.2 308 42.5
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 4.8e-44 183.7 225 42.7
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 6.3e-44 183.3 139 67.6
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 6.9e-43 179.9 156 63.5
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 6.5e-41 173.3 229 46.7
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 1.0e-38 166.0 125 67.2
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.6e-36 158.7 158 56.3
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 3.7e-36 157.5 428 33.9
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-33 149.1 133 58.6
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 2.7e-31 141.4 145 56.6
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 4.8e-28 130.6 141 47.5
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 6.9e-27 126.7 141 54.6
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.8e-25 120.9 191 44.5
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.1e-21 109.4 62 90.3
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.4e-19 102.4 435 28.5
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 7.0e-19 100.1 71 62.0
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.1e-15 88.6 106 53.8
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 6.1e-15 87.0 79 53.2
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 8.0e-15 86.7 73 50.7
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 4.5e-10 70.9 120 40.8
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 2.9e-09 68.2 48 70.8
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 6.5e-09 67.0 144 35.4
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 1.5e-08 65.9 71 42.3
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 2.1e-07 62.0 39 69.2
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 8.0e-07 60.1 55 47.3
MD12G1168400 Malus domestica HOM05D004806 ORTHO05D005397 1.4e-06 59.3 28 92.9
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 4.0e-06 57.8 51 56.9


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