Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 2.0e-121 439.1 220 100.0
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 1.2e-107 393.3 220 92.3
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.4e-95 351.3 248 76.2
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.5e-94 348.6 248 76.2
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 9.6e-92 340.5 276 68.5
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.0e-89 332.8 276 67.4
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 7.6e-89 330.9 276 67.4
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 6.0e-78 294.7 220 71.4
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 1.5e-76 290.0 221 71.0
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 1.7e-59 233.4 207 62.3
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 9.1e-58 227.6 207 61.8
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 2.6e-57 226.1 205 60.0
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 5.9e-57 224.9 221 57.0
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.7e-56 223.4 212 59.9
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.9e-55 219.9 213 58.7
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 5.5e-55 218.4 204 60.8
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 2.3e-53 213.0 219 55.7
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 6.7e-53 211.5 217 55.3
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 6.7e-53 211.5 217 57.6
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.6e-52 209.5 209 58.4
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.3e-50 201.8 209 57.4
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 7.0e-50 201.4 206 56.8
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.6e-49 199.5 220 55.0
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 5.9e-49 198.4 182 59.9
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 7.7e-49 198.0 179 60.3
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 6.5e-48 194.9 188 59.0
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 3.2e-47 192.6 203 53.2
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 5.5e-47 191.8 200 56.5
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 7.2e-47 191.4 192 56.8
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 7.2e-47 191.4 192 56.2
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 1.2e-46 190.7 215 49.8
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.2e-46 190.7 204 56.9
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 2.1e-46 189.9 190 59.5
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.7e-46 189.5 164 65.9
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 3.6e-46 189.1 203 55.7
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 4.7e-46 188.7 209 52.6
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 8.0e-46 188.0 214 48.6
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 8.0e-46 188.0 198 54.5
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 1.4e-45 187.2 204 52.5
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 2.3e-45 186.4 201 56.2
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 2.3e-45 186.4 195 52.8
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.3e-45 186.4 192 54.7
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.3e-45 186.4 192 54.7
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 3.0e-45 186.0 220 54.1
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 3.0e-45 186.0 220 54.1
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 3.0e-45 186.0 221 51.6
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 4.0e-45 185.7 211 54.0
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 8.8e-45 184.5 210 53.3
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 1.2e-44 184.1 165 61.2
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.5e-44 183.7 168 58.3
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 2.0e-44 183.3 198 53.5
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.3e-44 182.6 199 55.8
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 4.4e-44 182.2 197 53.8
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.3e-43 180.6 168 57.7
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 2.2e-43 179.9 200 54.0
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 3.7e-43 179.1 191 56.0
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 3.7e-43 179.1 208 51.9
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 3.7e-43 179.1 216 52.3
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.8e-43 178.7 175 57.1
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.8e-43 178.7 183 52.5
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 8.2e-43 177.9 207 52.7
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.1e-42 177.6 169 58.0
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.1e-42 177.6 187 52.9
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 2.4e-42 176.4 201 50.7
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 7.0e-42 174.9 205 51.7
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 3.5e-41 172.6 187 51.9
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 3.5e-41 172.6 190 53.7
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 4.5e-41 172.2 182 53.8
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 2.2e-40 169.9 173 54.3
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 5.0e-40 168.7 169 56.8
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 5.5e-39 165.2 198 48.0
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 2.7e-38 162.9 214 49.5
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 4.7e-38 162.2 215 51.6
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.4e-37 160.6 185 50.3
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 4.0e-37 159.1 185 49.7
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 4.0e-37 159.1 139 61.2
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 5.2e-37 158.7 178 56.7
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 5.7e-36 155.2 178 55.6
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 7.5e-36 154.8 197 46.7
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 1.3e-35 154.1 178 55.1
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.1e-34 149.4 197 46.2
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 9.1e-34 147.9 171 53.2
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.2e-33 147.5 198 47.0
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.7e-33 146.4 154 54.5
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 7.7e-33 144.8 219 44.3
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 6.5e-32 141.7 240 43.3
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 6.5e-32 141.7 205 47.8
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 8.5e-32 141.4 210 44.3
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.5e-31 140.6 167 52.1
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.9e-31 140.2 208 48.6
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 4.2e-31 139.0 197 44.2
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 4.7e-30 135.6 196 44.9
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.0e-29 134.4 119 60.5
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.2e-28 131.0 173 44.5
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 1.5e-28 130.6 133 54.1
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 2.6e-28 129.8 201 41.8
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 1.7e-27 127.1 154 52.6
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 6.3e-27 125.2 173 50.3
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.2e-25 120.9 170 52.9
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 2.5e-23 113.2 139 51.8
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 8.9e-21 104.8 191 41.4
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 9.8e-20 101.3 213 39.9
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 1.8e-18 97.1 142 43.7
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 4.1e-18 95.9 177 39.5
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 8.0e-14 81.6 128 45.3
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 3.4e-12 76.3 190 33.7
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 4.4e-12 75.9 118 45.8
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 9.8e-12 74.7 124 43.5
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.3e-11 74.3 114 45.6
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.3e-11 74.3 114 45.6
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 8.3e-11 71.6 165 39.4
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 8.3e-11 71.6 167 35.9
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 1.1e-10 71.2 165 35.8
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.4e-10 70.9 114 43.0
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 7.0e-10 68.6 162 38.9
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 1.2e-09 67.8 134 40.3
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 2.0e-09 67.0 156 42.3
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 2.3e-08 63.5 146 39.0
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 3.9e-08 62.8 144 34.0


User provided reference genes

Program Settings