Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 1.2e-239 832.8 420 100.0
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 1.8e-208 729.2 423 87.7
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.0e-206 723.4 417 88.2
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.7e-206 722.6 418 87.8
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.2e-206 722.2 412 88.6
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 1.5e-186 656.4 443 76.5
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.6e-183 646.4 419 81.4
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 2.1e-172 609.4 443 72.7
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 1.4e-163 580.1 438 67.1
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 4.1e-160 568.5 442 64.9
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 2.1e-159 566.2 443 65.2
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 3.0e-158 562.4 438 64.2
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 2.5e-157 559.3 446 64.3
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 1.8e-155 553.1 459 62.3
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 3.1e-155 552.4 443 65.5
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 4.0e-155 552.0 444 62.8
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 5.2e-155 551.6 413 65.6
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.2e-154 550.4 433 64.0
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 9.9e-154 547.4 433 63.7
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 6.4e-153 544.7 430 64.4
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.9e-152 543.1 415 64.1
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 1.2e-151 540.4 416 63.9
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 1.2e-151 540.4 438 63.7
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 5.1e-150 535.0 416 63.7
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 6.6e-150 534.6 413 65.1
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 6.6e-150 534.6 447 61.3
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 1.4e-144 516.9 424 59.7
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 2.4e-144 516.2 428 59.1
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 9.3e-144 514.2 433 60.5
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 4.6e-143 511.9 409 61.6
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 4.6e-143 511.9 459 57.5
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 6.0e-143 511.5 432 61.6
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 7.8e-143 511.1 433 59.1
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 1.3e-142 510.4 431 58.0
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 2.3e-142 509.6 431 60.3
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 3.9e-142 508.8 410 62.7
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 1.9e-141 506.5 428 57.7
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 2.5e-141 506.1 409 61.4
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 4.3e-141 505.4 413 62.2
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 4.3e-141 505.4 422 60.2
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 5.6e-141 505.0 432 61.8
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 7.3e-141 504.6 433 57.3
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 7.3e-141 504.6 420 60.5
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 7.3e-141 504.6 430 60.5
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 9.6e-141 504.2 422 60.2
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 1.6e-140 503.4 437 60.0
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 2.1e-140 503.1 432 60.9
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 2.1e-140 503.1 427 60.4
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 1.1e-139 500.7 427 59.3
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 1.4e-139 500.4 433 59.8
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 1.4e-139 500.4 441 60.8
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 1.4e-139 500.4 425 58.8
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 6.9e-139 498.0 424 59.4
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.2e-138 497.3 300 85.0
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 4.5e-138 495.4 469 55.2
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 5.8e-138 495.0 426 59.4
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 7.6e-138 494.6 435 59.5
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 2.9e-137 492.7 422 57.8
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 1.1e-136 490.7 422 60.4
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 1.9e-136 490.0 421 58.4
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 4.2e-136 488.8 427 57.4
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 9.3e-136 487.6 451 57.4
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 9.3e-136 487.6 420 59.8
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 1.6e-135 486.9 416 57.2
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 1.6e-135 486.9 410 60.5
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 3.5e-135 485.7 416 57.2
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 4.6e-135 485.3 425 58.6
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 1.0e-134 484.2 410 58.3
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 1.3e-134 483.8 422 57.1
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 5.1e-134 481.9 402 59.0
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 6.7e-134 481.5 410 58.5
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 6.7e-134 481.5 405 59.0
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 8.7e-134 481.1 420 57.1
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 5.6e-133 478.4 408 58.8
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 5.6e-133 478.4 438 56.6
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 6.2e-132 474.9 404 58.2
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 3.1e-131 472.6 412 56.6
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 6.9e-131 471.5 299 74.2
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 1.2e-130 470.7 430 55.3
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 2.2e-129 466.5 482 53.7
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 3.8e-129 465.7 418 56.2
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 3.5e-127 459.1 442 56.3
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 6.7e-126 454.9 400 60.2
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 1.1e-125 454.1 422 55.9
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 1.9e-125 453.4 443 56.9
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 1.6e-124 450.3 410 57.8
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 2.0e-122 443.4 359 61.6
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 2.0e-122 443.4 408 56.1
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 5.8e-122 441.8 415 56.4
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 7.1e-120 434.9 425 55.1
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 1.0e-118 431.0 291 67.7
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 1.3e-118 430.6 367 59.4
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 7.6e-114 414.8 409 50.9
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 1.2e-111 407.5 442 51.8
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 1.0e-110 404.4 443 51.0
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 2.3e-110 403.3 404 51.7
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 5.3e-107 392.1 408 48.8
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 3.0e-102 376.3 437 47.8
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 1.0e-89 334.7 422 41.7
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 8.5e-89 331.6 322 53.7
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 1.1e-83 314.7 441 44.0
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 3.1e-75 286.6 147 93.9
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 1.0e-62 245.0 150 74.7
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 1.3e-60 238.0 237 52.3
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 1.9e-59 234.2 376 41.8
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 3.2e-59 233.4 147 80.3
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 2.7e-58 230.3 263 47.9
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.0e-57 228.4 155 69.0
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 3.1e-54 216.9 385 32.2
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 4.0e-54 216.5 405 36.3
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 5.2e-54 216.1 358 34.4
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 3.4e-53 213.4 257 40.9
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 2.5e-48 197.2 217 51.2
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.5e-45 188.0 253 39.5
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 3.4e-45 186.8 141 57.4
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.9e-40 171.0 160 56.2
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 1.1e-35 155.2 159 48.4
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.8e-30 137.9 253 32.4
Cre01.g048600 Chlamydomonas reinhardtii HOM05D006228 ORTHO05D007847 1.6e-15 88.2 186 26.9
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 6.2e-15 86.3 113 40.7
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 1.2e-13 82.0 65 53.8
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 1.5e-13 81.6 65 55.4
PRCOL_00002967 Prasinoderma coloniale HOM05D006228 ORTHO05D007847 4.6e-10 70.1 229 27.1


User provided reference genes

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