Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0368821 Rosa chinensis HOM05D022825 ORTHO05D001282 1.0e-57 226.9 147 100.0
FvH4_7g23590 Fragaria vesca HOM05D001463 ORTHO05D001282 2.5e-43 179.1 154 72.1
FAN06G0722 Fragaria x ananassa HOM05D001463 ORTHO05D001282 3.0e-41 172.2 147 71.4
FAN06G2530 Fragaria x ananassa HOM05D022825 ORTHO05D001282 8.8e-41 170.6 151 73.5
FAN03G1607 Fragaria x ananassa HOM05D022825 ORTHO05D001282 2.6e-40 169.1 148 76.4
FAN10G4334 Fragaria x ananassa HOM05D022825 ORTHO05D001282 9.1e-38 160.6 119 80.7
FAN01G2241 Fragaria x ananassa HOM05D022825 ORTHO05D001282 1.4e-33 146.7 120 75.0
MD07G1207300 Malus domestica HOM05D001463 ORTHO05D001282 2.8e-18 95.9 162 45.1
QL08p062024 Quercus lobata HOM05D001463 ORTHO05D001282 2.2e-15 86.3 162 40.7
CiPaw.02G188100 Carya illinoinensis HOM05D001463 ORTHO05D001282 3.7e-15 85.5 179 40.8
Glyma.02G252500 Glycine max HOM05D001463 ORTHO05D001282 3.7e-15 85.5 162 45.1
CiPaw.01G293300 Carya illinoinensis HOM05D001463 ORTHO05D001282 1.1e-14 84.0 166 45.2
Potri.008G061700 Populus trichocarpa HOM05D001463 ORTHO05D001282 3.1e-14 82.4 170 38.2
Lalb_Chr18g0052921 Lupinus albus HOM05D001463 ORTHO05D001282 5.4e-14 81.6 165 43.6
MD01G1141700 Malus domestica HOM05D001463 ORTHO05D001282 1.2e-13 80.5 157 44.6
Cpa.g.sc19.255 Carica papaya HOM05D001463 ORTHO05D001282 3.5e-13 79.0 160 43.8
Prupe.2G242500 Prunus persica HOM05D001463 ORTHO05D001282 3.5e-13 79.0 162 56.2
Sabra08G0045300 Salix brachista HOM05D001463 ORTHO05D001282 4.5e-13 78.6 166 38.6
Phvul.001G238300 Phaseolus vulgaris HOM05D001463 ORTHO05D001282 1.3e-12 77.0 166 39.8
Psat2g037000 Pisum sativum HOM05D001463 ORTHO05D001282 1.3e-12 77.0 156 38.5
Atru.chr12.267 Acer truncatum HOM05D001463 ORTHO05D001282 1.7e-12 76.6 159 42.1
Haze_17151 Corylus avellana HOM05D001463 ORTHO05D001282 1.7e-12 76.6 170 39.4
Ciclev10033996m.g Citrus clementina HOM05D001463 ORTHO05D001282 2.9e-12 75.9 163 47.9
Medtr5g081360 Medicago truncatula HOM05D001463 ORTHO05D001282 3.8e-12 75.5 162 37.7
Ca_05913_v3 Cicer arietinum L. HOM05D001463 ORTHO05D001282 1.5e-11 73.6 166 38.6
Thecc.10G031300 Theobroma cacao HOM05D001463 ORTHO05D001282 1.9e-11 73.2 155 47.7
Gohir.A05G302600 Gossypium hirsutum HOM05D001463 ORTHO05D001282 3.3e-11 72.4 177 32.8
Eucgr.J00967 Eucalyptus grandis HOM05D001463 ORTHO05D001282 4.3e-11 72.0 185 33.0
Lj6g0014007 Lotus japonicus HOM05D001463 ORTHO05D001282 7.3e-11 71.2 139 44.6
Manes.10G021200 Manihot esculenta HOM05D001463 ORTHO05D001282 1.2e-10 70.5 150 51.3
Manes.07G122500 Manihot esculenta HOM05D001463 ORTHO05D001282 2.1e-10 69.7 144 37.5
THA.LOC104810063 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 2.8e-10 69.3 166 40.4
Hma1.2p1_0026F.1_g016620 Hydrangea macrophylla HOM05D001463 ORTHO05D001282 3.6e-10 68.9 147 42.2
Potri.010G196400 Populus trichocarpa HOM05D001463 ORTHO05D001282 8.0e-10 67.8 145 39.3
Glyma.18G033302 Glycine max HOM05D001463 ORTHO05D001282 1.0e-09 67.4 148 41.9
Glyma.14G064100 Glycine max HOM05D001463 ORTHO05D001282 1.4e-09 67.0 168 39.3
CARHR207250 Cardamine hirsuta HOM05D012265 ORTHO05D014407 1.8e-09 66.6 150 40.7
Solyc05g052890.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 3.1e-09 65.9 164 36.0
CsaV3_5G008550 Cucumis sativus L. HOM05D001463 ORTHO05D001282 4.0e-09 65.5 174 34.5
LjContig00141g0025360 Lotus japonicus HOM05D001463 ORTHO05D001282 5.2e-09 65.1 167 37.7
Gohir.A10G225400 Gossypium hirsutum HOM05D001463 ORTHO05D001282 6.8e-09 64.7 154 35.7
Sopen05g031400 Solanum pennellii HOM05D001463 ORTHO05D001282 6.8e-09 64.7 164 36.0
THA.LOC104814892 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 6.8e-09 64.7 148 34.5
MELO3C026564.2 Cucumis melo HOM05D001463 ORTHO05D001282 8.9e-09 64.3 171 31.6
Gohir.D05G092800 Gossypium hirsutum HOM05D001463 ORTHO05D001282 8.9e-09 64.3 157 31.8
THA.LOC104810744 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 8.9e-09 64.3 127 35.4
VMungo1383G2188 Vigna mungo HOM05D001463 ORTHO05D001282 1.2e-08 63.9 160 35.0
Dinv16275 Davidia involucrata HOM05D001463 ORTHO05D001282 1.5e-08 63.5 180 38.3
BcaC01g01877 Brassica carinata HOM05D001463 ORTHO05D001282 2.0e-08 63.2 145 37.2
BcaC02g09782 Brassica carinata HOM05D001463 ORTHO05D001282 2.0e-08 63.2 141 35.5
Duzib106G2001 Durio zibethinus HOM05D001463 ORTHO05D001282 2.0e-08 63.2 148 57.4
Gorai.011G273400 Gossypium raimondii HOM05D001463 ORTHO05D001282 2.6e-08 62.8 150 34.7
MSTRG.8288 Avicennia marina HOM05D001463 ORTHO05D001282 3.4e-08 62.4 166 35.5
Gohir.D10G238356 Gossypium hirsutum HOM05D001463 ORTHO05D001282 3.4e-08 62.4 149 34.9
LjContig00141g0012501 Lotus japonicus HOM05D001463 ORTHO05D001282 3.4e-08 62.4 168 36.3
Aa31LG1G11770 Aethionema arabicum HOM05D001463 ORTHO05D001282 4.4e-08 62.0 125 36.8
BcaB02g08404 Brassica carinata HOM05D001463 ORTHO05D001282 4.4e-08 62.0 140 34.3
HanXRQChr07g0202061 Helianthus annuus HOM05D001463 ORTHO05D001282 4.4e-08 62.0 171 34.5
COL.COLO4_25564 Corchorus olitorius HOM05D001463 ORTHO05D001282 5.8e-08 61.6 104 37.5
Solyc09g011470.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 7.5e-08 61.2 150 32.7
GSVIVG01016436001 Vitis vinifera HOM05D001463 ORTHO05D001282 7.5e-08 61.2 176 36.9
AL5G25910 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 9.8e-08 60.8 119 38.7
BcaB01g00963 Brassica carinata HOM05D001463 ORTHO05D001282 1.3e-07 60.5 119 37.8
Carub.0008s1987 Capsella rubella HOM05D001463 ORTHO05D001282 1.3e-07 60.5 122 34.4
Actinidia02381 Actinidia chinensis HOM05D001463 ORTHO05D001282 1.7e-07 60.1 138 37.0
HanXRQChr14g0458451 Helianthus annuus HOM05D001463 ORTHO05D001282 1.7e-07 60.1 142 35.9
Sabra10G0151000 Salix brachista HOM05D001463 ORTHO05D001282 2.2e-07 59.7 143 35.0
TWI15G0258 Tripterygium wilfordii HOM05D001463 ORTHO05D001282 2.2e-07 59.7 137 37.2
AL8G35630 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 2.9e-07 59.3 147 32.7
BcaC02g12118 Brassica carinata HOM05D001463 ORTHO05D001282 2.9e-07 59.3 138 36.2
Psat5g124880 Pisum sativum HOM05D001463 ORTHO05D001282 2.9e-07 59.3 135 36.3
PGR044G2554 Punica granatum HOM05D001463 ORTHO05D001282 2.9e-07 59.3 133 37.6
Dinv34453 Davidia involucrata HOM05D001463 ORTHO05D001282 3.7e-07 58.9 176 35.2
Medtr5g012280 Medicago truncatula HOM05D001463 ORTHO05D001282 3.7e-07 58.9 159 32.7
CANSAT56G2845 Cannabis sativa HOM05D001463 ORTHO05D001282 4.9e-07 58.5 177 47.5
Duzib106G1623 Durio zibethinus HOM05D001463 ORTHO05D001282 4.9e-07 58.5 174 52.3
THA.LOC104816242 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 4.9e-07 58.5 126 35.7
BcaB02g09078 Brassica carinata HOM05D001463 ORTHO05D001282 6.4e-07 58.2 137 37.2
A03p11840 Brassica napus HOM05D001463 ORTHO05D001282 6.4e-07 58.2 122 35.2
BraA02t05810Z Brassica rapa HOM05D001463 ORTHO05D001282 6.4e-07 58.2 130 36.2
Cc02_g07230 Coffea canephora HOM05D001463 ORTHO05D001282 6.4e-07 58.2 168 34.5
Sp5g14870 Schrenkiella parvula HOM05D001463 ORTHO05D001282 6.4e-07 58.2 119 35.3
GSVIVG01024854001 Vitis vinifera HOM05D001463 ORTHO05D001282 6.4e-07 58.2 171 30.4
A05p06550 Brassica napus HOM05D001463 ORTHO05D001282 8.3e-07 57.8 161 33.5
C04p67640 Brassica napus HOM05D001463 ORTHO05D001282 8.3e-07 57.8 167 34.1
BolC4t28263H Brassica oleracea HOM05D001463 ORTHO05D001282 8.3e-07 57.8 167 34.1
AT3G46880 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 1.1e-06 57.4 145 32.4
A06p20670 Brassica napus HOM05D001463 ORTHO05D001282 1.1e-06 57.4 140 33.6
BraA03t10495Z Brassica rapa HOM05D001463 ORTHO05D001282 1.1e-06 57.4 122 35.2
HanXRQChr07g0202081 Helianthus annuus HOM05D001463 ORTHO05D001282 1.1e-06 57.4 164 34.1
Manes.02G126600 Manihot esculenta HOM05D001463 ORTHO05D001282 1.1e-06 57.4 148 31.8
Sed0003709 Sechium edule HOM05D001463 ORTHO05D001282 1.1e-06 57.4 161 33.5
PGSC0003DMG400027191 Solanum tuberosum HOM05D001463 ORTHO05D001282 1.1e-06 57.4 162 33.3
BcaB08g36279 Brassica carinata HOM05D001463 ORTHO05D001282 1.9e-06 56.6 122 33.6
BolC3t13837H Brassica oleracea HOM05D001463 ORTHO05D001282 1.9e-06 56.6 122 35.2
ClCG07G003740 Citrullus lanatus HOM05D001463 ORTHO05D001282 1.9e-06 56.6 163 33.1
Sp6g20900 Schrenkiella parvula HOM05D001463 ORTHO05D001282 1.9e-06 56.6 122 35.2
PGSC0003DMG400002161 Solanum tuberosum HOM05D001463 ORTHO05D001282 1.9e-06 56.6 149 30.9
AL4G37420 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 2.4e-06 56.2 162 32.7
A04p04330 Brassica napus HOM05D001463 ORTHO05D001282 2.4e-06 56.2 140 32.1
BraA04t16144Z Brassica rapa HOM05D001463 ORTHO05D001282 2.4e-06 56.2 140 32.1
Duzib106G1527 Durio zibethinus HOM05D001463 ORTHO05D001282 2.4e-06 56.2 145 55.9
Medtr3g069570 Medicago truncatula HOM05D001463 ORTHO05D001282 2.4e-06 56.2 159 39.6
AT5G59080 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 3.2e-06 55.8 148 31.8
C04p07650 Brassica napus HOM05D001463 ORTHO05D001282 3.2e-06 55.8 149 36.9
CARHR211340 Cardamine hirsuta HOM05D001463 ORTHO05D001282 3.2e-06 55.8 138 32.6
Lj3g0027625 Lotus japonicus HOM05D001463 ORTHO05D001282 3.2e-06 55.8 174 32.8
Lalb_Chr10g0104861 Lupinus albus HOM05D001463 ORTHO05D001282 3.2e-06 55.8 142 35.2
Oeu013160.1 Olea europaea HOM05D001463 ORTHO05D001282 3.2e-06 55.8 148 29.1
Peaxi162Scf00975g10014 Petunia axillaris HOM05D001463 ORTHO05D001282 3.2e-06 55.8 149 31.5
CSS0026922 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 4.1e-06 55.5 172 30.2
CsaV3_1G035720 Cucumis sativus L. HOM05D001463 ORTHO05D001282 4.1e-06 55.5 125 46.4
Rhsim03G0137600 Rhododendron simsii HOM05D001463 ORTHO05D001282 4.1e-06 55.5 164 35.4
unitig_744.g24620 Utricularia gibba HOM05D001463 ORTHO05D001282 4.1e-06 55.5 130 33.8
MSTRG.19051 Avicennia marina HOM05D001463 ORTHO05D001282 5.4e-06 55.1 147 36.1
BcaC04g19809 Brassica carinata HOM05D001463 ORTHO05D001282 5.4e-06 55.1 122 34.4
DCAR_011755 Daucus carota HOM05D001463 ORTHO05D001282 5.4e-06 55.1 145 31.0
Thhalv10014998m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 5.4e-06 55.1 120 34.2
Gohir.A05G092000 Gossypium hirsutum HOM05D001463 ORTHO05D001282 5.4e-06 55.1 150 30.0
Gorai.009G095400 Gossypium raimondii HOM05D001463 ORTHO05D001282 5.4e-06 55.1 150 30.7
C04p36660 Brassica napus HOM05D001463 ORTHO05D001282 7.0e-06 54.7 140 32.1
BolC4t25129H Brassica oleracea HOM05D001463 ORTHO05D001282 7.0e-06 54.7 140 32.1
CSS0026065 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 7.0e-06 54.7 176 30.1
Hund16038 Selenicereus undatus HOM05D001463 ORTHO05D001282 7.0e-06 54.7 127 33.1
Sc11g0007610 Simmondsia chinensis HOM05D001463 ORTHO05D001282 7.0e-06 54.7 137 37.2
Thecc.09G312500 Theobroma cacao HOM05D001463 ORTHO05D001282 7.0e-06 54.7 172 30.2
ECA238G2806 Erigeron canadensis HOM05D001463 ORTHO05D001282 9.2e-06 54.3 149 36.9
Thhalv10017636m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 9.2e-06 54.3 116 44.0
SalBow4G3124 Salvia bowleyana HOM05D001463 ORTHO05D001282 9.2e-06 54.3 125 34.4


User provided reference genes

Program Settings