Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0368161 Rosa chinensis HOM05D003355 ORTHO05D019199 8.0e-126 453.8 227 100.0
RcHm_v2.0_Chr1g0368121 Rosa chinensis HOM05D003355 ORTHO05D019199 1.5e-116 422.9 227 93.4
RcHm_v2.0_Chr1g0368141 Rosa chinensis HOM05D003355 ORTHO05D019199 3.7e-115 418.3 227 93.0
FAN06G3490 Fragaria x ananassa HOM05D003355 ORTHO05D019199 1.3e-46 190.7 190 56.8
FAN01G0345 Fragaria x ananassa HOM05D003355 ORTHO05D019199 1.1e-45 187.6 193 55.4
FAN06G4656 Fragaria x ananassa HOM05D003355 ORTHO05D019199 1.8e-45 186.8 190 55.8
FAN01G0015 Fragaria x ananassa HOM05D003355 ORTHO05D019199 5.2e-32 142.1 97 70.1
FAN06G1002 Fragaria x ananassa HOM05D003355 ORTHO05D019199 5.2e-32 142.1 97 70.1
FAN01G2396 Fragaria x ananassa HOM05D023153 ORTHO05D203137 3.2e-26 122.9 228 38.2
FvH4_7g22960 Fragaria vesca HOM05D023153 ORTHO05D029351 6.8e-24 115.2 143 52.4
FAN06G3825 Fragaria x ananassa HOM05D023153 ORTHO05D029351 2.6e-23 113.2 177 44.1
FAN03G0622 Fragaria x ananassa HOM05D023153 ORTHO05D029351 2.2e-22 110.2 116 56.0
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 2.0e-20 103.6 193 33.2
RcHm_v2.0_Chr5g0014031 Rosa chinensis HOM05D003355 ORTHO05D013882 1.0e-19 101.3 179 35.2
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 1.3e-19 100.9 226 31.9
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 6.6e-19 98.6 226 31.0
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 6.6e-19 98.6 217 31.8
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 8.6e-19 98.2 209 31.1
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 1.9e-18 97.1 208 30.8
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 2.5e-18 96.7 218 32.6
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 3.3e-18 96.3 226 31.4
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 3.3e-18 96.3 219 32.4
FvH4_6g02020 Fragaria vesca HOM05D017208 ORTHO05D025447 7.2e-18 95.1 186 31.7
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 7.2e-18 95.1 209 29.2
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 7.2e-18 95.1 219 30.6
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 9.5e-18 94.7 219 31.1
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 9.5e-18 94.7 221 29.4
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 9.5e-18 94.7 225 29.3
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 9.5e-18 94.7 228 30.7
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 1.2e-17 94.4 226 29.6
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 1.2e-17 94.4 237 29.5
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.2e-17 94.4 237 29.5
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.2e-17 94.4 237 29.5
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.2e-17 94.4 237 29.5
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 1.2e-17 94.4 225 29.3
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 1.2e-17 94.4 209 29.2
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 1.6e-17 94.0 228 30.7
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 2.1e-17 93.6 209 28.7
FAN01G0788 Fragaria x ananassa HOM05D023153 ORTHO05D029351 2.1e-17 93.6 116 52.6
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 2.1e-17 93.6 211 31.3
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 2.1e-17 93.6 237 28.7
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 2.1e-17 93.6 212 29.7
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 2.8e-17 93.2 218 30.7
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 2.8e-17 93.2 225 29.8
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 2.8e-17 93.2 225 28.9
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 2.8e-17 93.2 223 30.5
FAN09G1640 Fragaria x ananassa HOM05D017208 ORTHO05D025447 3.6e-17 92.8 176 32.4
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 3.6e-17 92.8 209 30.1
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 3.6e-17 92.8 209 31.1
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 4.7e-17 92.4 208 30.3
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 6.1e-17 92.0 209 30.1
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 6.1e-17 92.0 218 29.4
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 8.0e-17 91.7 209 30.6
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 8.0e-17 91.7 209 30.6
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 8.0e-17 91.7 209 29.2
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 1.0e-16 91.3 221 28.5
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 1.0e-16 91.3 208 29.8
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 1.0e-16 91.3 218 31.2
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 1.0e-16 91.3 209 30.6
FvH4_6g02030 Fragaria vesca HOM05D017208 ORTHO05D025447 1.4e-16 90.9 199 31.7
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 1.4e-16 90.9 229 29.7
RcHm_v2.0_Chr1g0342801 Rosa chinensis HOM05D003355 ORTHO05D025519 1.4e-16 90.9 176 35.2
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 1.4e-16 90.9 209 30.1
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 1.8e-16 90.5 219 30.6
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 1.8e-16 90.5 209 30.1
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 2.3e-16 90.1 209 30.1
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 2.3e-16 90.1 209 30.1
FAN05G1965 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.3e-16 90.1 175 32.0
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 2.3e-16 90.1 230 29.1
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 3.0e-16 89.7 219 29.2
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 3.0e-16 89.7 209 29.2
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 3.0e-16 89.7 229 30.6
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 3.0e-16 89.7 209 29.7
RcHm_v2.0_Chr5g0014041 Rosa chinensis HOM05D003355 ORTHO05D013882 4.0e-16 89.4 186 33.3
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 4.0e-16 89.4 218 28.9
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 5.2e-16 89.0 219 30.6
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 5.2e-16 89.0 218 29.8
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 5.2e-16 89.0 218 29.8
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 5.2e-16 89.0 210 30.5
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 5.2e-16 89.0 202 30.2
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 6.8e-16 88.6 219 30.6
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 6.8e-16 88.6 219 30.6
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 8.9e-16 88.2 214 30.8
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 1.2e-15 87.8 218 30.3
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 1.5e-15 87.4 218 29.4
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 1.5e-15 87.4 218 30.3
AL6G18890 Arabidopsis lyrata HOM05D003355 ORTHO05D006192 1.5e-15 87.4 221 27.1
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 1.5e-15 87.4 218 30.3
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 1.5e-15 87.4 209 29.7
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 1.5e-15 87.4 215 31.2
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 1.5e-15 87.4 215 31.2
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 2.0e-15 87.0 219 28.8
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 2.6e-15 86.7 219 28.8
FvH4_1g11160 Fragaria vesca HOM05D003355 ORTHO05D013882 2.6e-15 86.7 182 29.7
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 2.6e-15 86.7 214 30.4
SalBow8G2178 Salvia bowleyana HOM05D003355 ORTHO05D006192 2.6e-15 86.7 245 29.4
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 2.6e-15 86.7 203 30.0
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 3.4e-15 86.3 218 29.8
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 3.4e-15 86.3 209 29.7
FAN19G0319 Fragaria x ananassa HOM05D003355 ORTHO05D013882 5.7e-15 85.5 182 29.7
BraA02t04958Z Brassica rapa HOM05D003355 ORTHO05D006192 7.5e-15 85.1 219 28.8
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 7.5e-15 85.1 86 55.8
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 7.5e-15 85.1 209 27.8
C02p03610 Brassica napus HOM05D003355 ORTHO05D006192 9.8e-15 84.7 219 28.3
CDE07G1612 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 9.8e-15 84.7 214 29.0
C09p68600 Brassica napus HOM05D003355 ORTHO05D006192 1.3e-14 84.3 219 30.1
Pp3c24_18710 Physcomitrium patens HOM05D003355 ORTHO05D006192 1.7e-14 84.0 218 29.4
Sabra07G0052100 Salix brachista HOM05D003355 ORTHO05D006192 1.7e-14 84.0 205 28.3
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 1.7e-14 84.0 209 27.3
AagrBONN_evm.TU.Sc2ySwM_117.1345 Anthoceros agrestis HOM05D003355 ORTHO05D006192 2.2e-14 83.6 218 30.7
BcaC03g13229 Brassica carinata HOM05D003355 ORTHO05D006192 2.2e-14 83.6 219 27.9
BolC2t06320H Brassica oleracea HOM05D003355 ORTHO05D006192 2.2e-14 83.6 219 27.9
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.9e-14 83.2 237 27.4
RcHm_v2.0_Chr3g0481091 Rosa chinensis HOM05D011179 ORTHO05D017929 6.4e-14 82.0 165 28.5
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 1.1e-13 81.3 207 30.0
AT5G08420 Arabidopsis thaliana HOM05D003355 ORTHO05D006192 1.8e-13 80.5 221 25.8
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 1.8e-13 80.5 221 28.5
Mapoly0002s0245 Marchantia polymorpha HOM05D003355 ORTHO05D006192 1.8e-13 80.5 218 28.9
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 2.4e-13 80.1 229 26.6
PGR142G1845 Punica granatum HOM05D003355 ORTHO05D006192 4.1e-13 79.3 209 28.2
CARHR204600 Cardamine hirsuta HOM05D003355 ORTHO05D006192 5.4e-13 79.0 197 29.9
FAN13G2254 Fragaria x ananassa HOM05D011179 ORTHO05D017929 5.4e-13 79.0 172 30.2
FAN13G3208 Fragaria x ananassa HOM05D011179 ORTHO05D017929 5.4e-13 79.0 172 30.2
Carub.0006s0734 Capsella rubella HOM05D003355 ORTHO05D006192 7.0e-13 78.6 209 27.3
FvH4_3g36460 Fragaria vesca HOM05D012211 ORTHO05D197262 7.0e-13 78.6 162 30.2
RcHm_v2.0_Chr7g0188481 Rosa chinensis HOM05D011179 ORTHO05D017929 7.0e-13 78.6 165 27.9
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 9.2e-13 78.2 214 28.5
Peaxi162Scf00616g00632 Petunia axillaris HOM05D003355 ORTHO05D006192 9.2e-13 78.2 214 29.4
MD04G1231500 Malus domestica HOM05D003355 ORTHO05D013882 1.6e-12 77.4 134 33.6
CBR_g23447 Chara braunii HOM05D003355 ORTHO05D006192 2.0e-12 77.0 218 28.9
FAN15G0401 Fragaria x ananassa HOM05D003355 ORTHO05D015652 3.5e-12 76.3 131 36.6
BraA02t04852Z Brassica rapa HOM05D003355 ORTHO05D006192 4.6e-12 75.9 175 27.4
FvH4_3g45301 Fragaria vesca HOM05D003355 ORTHO05D013882 5.9e-12 75.5 173 28.9
Prupe.2G125300 Prunus persica HOM05D003355 ORTHO05D013882 5.9e-12 75.5 157 30.6
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 7.8e-12 75.1 177 29.9
FAN08G0872 Fragaria x ananassa HOM05D011179 ORTHO05D017929 1.0e-11 74.7 167 29.3
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 1.0e-11 74.7 176 31.2
RcHm_v2.0_Chr7g0210441 Rosa chinensis HOM05D012211 ORTHO05D029661 1.7e-11 73.9 137 32.1
RcHm_v2.0_Chr7g0223281 Rosa chinensis HOM05D011179 ORTHO05D017929 1.7e-11 73.9 123 30.9
FAN05G2571 Fragaria x ananassa HOM05D012211 ORTHO05D045515 3.9e-11 72.8 162 29.0
FvH4_5g09780 Fragaria vesca HOM05D011179 ORTHO05D017929 8.6e-11 71.6 155 28.4
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 1.5e-10 70.9 225 25.3
FAN04G2164 Fragaria x ananassa HOM05D003355 ORTHO05D015652 1.5e-10 70.9 168 23.8
CARHR204150 Cardamine hirsuta HOM05D003355 ORTHO05D006192 2.5e-10 70.1 189 25.4
FvH4_6g42520 Fragaria vesca HOM05D012211 ORTHO05D029661 2.5e-10 70.1 133 33.1
FvH4_6g42550 Fragaria vesca HOM05D012211 ORTHO05D045515 2.5e-10 70.1 162 27.8
FvH4_7g08170 Fragaria vesca HOM05D020185 ORTHO05D025519 2.5e-10 70.1 160 30.6
FAN10G3381 Fragaria x ananassa HOM05D020185 ORTHO05D025519 2.5e-10 70.1 159 30.2
MCO15G216 Micromonas commoda HOM05D003355 ORTHO05D006192 2.5e-10 70.1 208 26.4
Cre12.g508200 Chlamydomonas reinhardtii HOM05D003355 ORTHO05D006192 3.3e-10 69.7 209 27.3
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 5.6e-10 68.9 171 28.7
C02p02380 Brassica napus HOM05D003355 ORTHO05D006192 5.6e-10 68.9 175 27.4
FAN08G1058 Fragaria x ananassa HOM05D011179 ORTHO05D017929 7.3e-10 68.6 165 27.3
PRCOL_00006993 Prasinoderma coloniale HOM05D003355 ORTHO05D006192 7.3e-10 68.6 187 29.4
Prupe.6G351700 Prunus persica HOM05D003355 ORTHO05D013882 7.3e-10 68.6 213 26.8
RcHm_v2.0_Chr7g0179721 Rosa chinensis HOM05D003355 ORTHO05D025419 9.5e-10 68.2 172 27.3
Cfa024749 Carpinus fangiana HOM05D003355 ORTHO05D006192 1.2e-09 67.8 223 28.7
FAN14G1550 Fragaria x ananassa HOM05D012211 ORTHO05D204992 1.2e-09 67.8 162 27.2
FvH4_3g36450 Fragaria vesca HOM05D012211 ORTHO05D013882 1.6e-09 67.4 152 31.6
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 2.1e-09 67.0 212 29.2
CARHR204610 Cardamine hirsuta HOM05D003355 ORTHO05D006192 3.6e-09 66.2 166 26.5
FAN05G5214 Fragaria x ananassa HOM05D017208 ORTHO05D025447 3.6e-09 66.2 122 31.1
BolC2t06203H Brassica oleracea HOM05D003355 ORTHO05D006192 4.7e-09 65.9 175 28.0
Sc06g0001940 Simmondsia chinensis HOM05D003355 ORTHO05D006192 4.7e-09 65.9 140 33.6
CAN.G179.43 Capsicum annuum HOM05D003355 ORTHO05D006192 8.0e-09 65.1 137 34.3
Haze_10137 Corylus avellana HOM05D003355 ORTHO05D006192 1.4e-08 64.3 229 23.6
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 2.3e-08 63.5 131 32.1
CDE07G0559 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 3.1e-08 63.2 131 31.3
AUR62032079 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.8e-08 62.0 141 31.9
AUR62034926 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.8e-08 62.0 141 31.9
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 6.8e-08 62.0 186 27.4
MD02G1015700 Malus domestica HOM05D003355 ORTHO05D247400 8.9e-08 61.6 160 23.8
MD03G1170900 Malus domestica HOM05D003355 ORTHO05D015652 2.6e-07 60.1 143 28.7
MD02G1059000 Malus domestica HOM05D003355 ORTHO05D247816 3.4e-07 59.7 199 25.6
FAN25G2890 Fragaria x ananassa HOM05D012211 ORTHO05D205130 4.4e-07 59.3 108 31.5
FAN02G2793 Fragaria x ananassa HOM05D012211 ORTHO05D210893 5.8e-07 58.9 184 25.0
FAN14G2936 Fragaria x ananassa HOM05D012211 ORTHO05D029661 5.8e-07 58.9 152 27.0
FvH4_5g09770 Fragaria vesca HOM05D011179 ORTHO05D015652 1.3e-06 57.8 98 26.5
FvH4_5g09741 Fragaria vesca HOM05D011179 ORTHO05D017929 3.7e-06 56.2 90 28.9
FAN05G3648 Fragaria x ananassa HOM05D012211 ORTHO05D029661 4.9e-06 55.8 133 31.6


User provided reference genes

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