Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0368141 Rosa chinensis HOM05D003355 ORTHO05D019199 5.2e-125 451.1 227 100.0
RcHm_v2.0_Chr1g0368121 Rosa chinensis HOM05D003355 ORTHO05D019199 2.9e-123 445.3 227 98.2
RcHm_v2.0_Chr1g0368161 Rosa chinensis HOM05D003355 ORTHO05D019199 8.3e-115 417.2 227 93.0
FAN06G3490 Fragaria x ananassa HOM05D003355 ORTHO05D019199 1.9e-50 203.4 190 60.0
FAN01G0345 Fragaria x ananassa HOM05D003355 ORTHO05D019199 5.5e-50 201.8 193 59.1
FAN06G4656 Fragaria x ananassa HOM05D003355 ORTHO05D019199 2.7e-49 199.5 190 58.9
FAN01G0015 Fragaria x ananassa HOM05D003355 ORTHO05D019199 7.5e-31 138.3 97 68.0
FAN06G1002 Fragaria x ananassa HOM05D003355 ORTHO05D019199 7.5e-31 138.3 97 68.0
FvH4_7g22960 Fragaria vesca HOM05D023153 ORTHO05D029351 2.7e-28 129.8 143 55.9
FAN06G3825 Fragaria x ananassa HOM05D023153 ORTHO05D029351 1.3e-27 127.5 177 46.9
FAN01G2396 Fragaria x ananassa HOM05D023153 ORTHO05D203137 5.0e-27 125.6 228 38.6
FAN03G0622 Fragaria x ananassa HOM05D023153 ORTHO05D029351 2.5e-26 123.2 116 60.3
FAN01G0788 Fragaria x ananassa HOM05D023153 ORTHO05D029351 8.3e-22 108.2 116 56.9
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 3.8e-19 99.4 86 61.6
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 8.6e-19 98.2 193 31.6
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 1.1e-18 97.8 226 31.9
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 4.3e-18 95.9 217 31.8
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 5.6e-18 95.5 226 31.0
RcHm_v2.0_Chr5g0014031 Rosa chinensis HOM05D003355 ORTHO05D013882 5.6e-18 95.5 178 33.1
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 9.5e-18 94.7 226 31.0
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 9.5e-18 94.7 209 31.6
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 9.5e-18 94.7 209 30.6
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 1.2e-17 94.4 221 30.3
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 1.6e-17 94.0 208 30.8
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 1.6e-17 94.0 225 30.7
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 2.1e-17 93.6 225 30.7
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 2.1e-17 93.6 237 29.5
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 2.8e-17 93.2 237 29.1
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.8e-17 93.2 237 29.1
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.8e-17 93.2 237 29.1
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.8e-17 93.2 237 29.1
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 4.7e-17 92.4 225 30.2
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 4.7e-17 92.4 219 31.1
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 4.7e-17 92.4 209 29.2
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 4.7e-17 92.4 219 30.6
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 6.1e-17 92.0 226 30.5
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 6.1e-17 92.0 228 29.8
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 8.0e-17 91.7 219 31.1
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 8.0e-17 91.7 209 30.1
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 8.0e-17 91.7 211 30.8
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 8.0e-17 91.7 217 31.8
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 1.0e-16 91.3 209 29.7
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 1.0e-16 91.3 209 30.6
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 1.0e-16 91.3 228 29.8
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 1.4e-16 90.9 225 30.7
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 1.8e-16 90.5 209 30.1
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 1.8e-16 90.5 209 30.1
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 1.8e-16 90.5 218 30.7
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 1.8e-16 90.5 209 29.7
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 2.3e-16 90.1 221 29.4
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 2.3e-16 90.1 208 30.3
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 3.0e-16 89.7 208 30.3
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 3.0e-16 89.7 218 29.4
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 3.0e-16 89.7 209 30.1
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 4.0e-16 89.4 229 29.3
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 4.0e-16 89.4 190 30.0
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 4.0e-16 89.4 209 29.7
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 5.2e-16 89.0 218 30.3
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 5.2e-16 89.0 209 29.7
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 5.2e-16 89.0 227 29.1
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 6.8e-16 88.6 219 30.1
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 6.8e-16 88.6 209 29.7
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 6.8e-16 88.6 209 29.7
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 8.9e-16 88.2 209 28.7
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 1.2e-15 87.8 219 30.1
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 1.2e-15 87.8 210 30.0
RcHm_v2.0_Chr1g0342801 Rosa chinensis HOM05D003355 ORTHO05D025519 1.2e-15 87.8 173 34.7
AL6G18890 Arabidopsis lyrata HOM05D003355 ORTHO05D006192 1.5e-15 87.4 221 28.1
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 1.5e-15 87.4 202 29.7
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 1.5e-15 87.4 230 30.0
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 2.0e-15 87.0 219 30.1
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 2.0e-15 87.0 209 29.7
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 2.0e-15 87.0 214 29.4
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 2.0e-15 87.0 214 29.4
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 2.0e-15 87.0 229 30.6
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 2.6e-15 86.7 219 30.1
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 2.6e-15 86.7 219 30.1
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 2.6e-15 86.7 229 28.8
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 3.4e-15 86.3 209 29.2
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 3.4e-15 86.3 218 28.9
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 4.4e-15 85.9 214 29.9
RcHm_v2.0_Chr5g0014041 Rosa chinensis HOM05D003355 ORTHO05D013882 4.4e-15 85.9 188 32.4
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 5.7e-15 85.5 218 29.8
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 5.7e-15 85.5 214 29.9
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 5.7e-15 85.5 219 29.2
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 5.7e-15 85.5 219 30.6
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 5.7e-15 85.5 219 30.6
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 5.7e-15 85.5 209 29.7
SalBow8G2178 Salvia bowleyana HOM05D003355 ORTHO05D006192 5.7e-15 85.5 245 29.8
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 7.5e-15 85.1 217 29.5
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 9.8e-15 84.7 216 31.0
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 9.8e-15 84.7 218 29.8
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 9.8e-15 84.7 202 30.2
BraA02t04958Z Brassica rapa HOM05D003355 ORTHO05D006192 1.7e-14 84.0 215 27.9
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 1.7e-14 84.0 219 28.8
Sabra07G0052100 Salix brachista HOM05D003355 ORTHO05D006192 1.7e-14 84.0 205 28.8
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 1.7e-14 84.0 209 28.7
C02p03610 Brassica napus HOM05D003355 ORTHO05D006192 2.2e-14 83.6 215 27.4
Pp3c24_18710 Physcomitrium patens HOM05D003355 ORTHO05D006192 2.2e-14 83.6 218 30.3
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 3.7e-14 82.8 209 28.2
BcaC03g13229 Brassica carinata HOM05D003355 ORTHO05D006192 4.9e-14 82.4 215 27.0
C09p68600 Brassica napus HOM05D003355 ORTHO05D006192 4.9e-14 82.4 219 29.7
BolC2t06320H Brassica oleracea HOM05D003355 ORTHO05D006192 4.9e-14 82.4 215 27.0
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 6.4e-14 82.0 218 30.3
FvH4_6g02020 Fragaria vesca HOM05D017208 ORTHO05D025447 6.4e-14 82.0 187 28.9
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 6.4e-14 82.0 237 27.4
AagrBONN_evm.TU.Sc2ySwM_117.1345 Anthoceros agrestis HOM05D003355 ORTHO05D006192 1.1e-13 81.3 218 29.4
CDE07G1612 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 1.4e-13 80.9 216 29.6
AT5G08420 Arabidopsis thaliana HOM05D003355 ORTHO05D006192 1.8e-13 80.5 221 26.7
FvH4_1g11160 Fragaria vesca HOM05D003355 ORTHO05D013882 1.8e-13 80.5 182 29.1
FAN09G1640 Fragaria x ananassa HOM05D017208 ORTHO05D025447 2.4e-13 80.1 177 29.4
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 2.4e-13 80.1 207 30.4
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 3.2e-13 79.7 229 27.5
Carub.0006s0734 Capsella rubella HOM05D003355 ORTHO05D006192 4.1e-13 79.3 209 27.3
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 4.1e-13 79.3 221 29.0
FAN19G0319 Fragaria x ananassa HOM05D003355 ORTHO05D013882 4.1e-13 79.3 182 29.1
Mapoly0002s0245 Marchantia polymorpha HOM05D003355 ORTHO05D006192 5.4e-13 79.0 218 29.4
PGR142G1845 Punica granatum HOM05D003355 ORTHO05D006192 7.0e-13 78.6 209 28.7
CARHR204600 Cardamine hirsuta HOM05D003355 ORTHO05D006192 9.2e-13 78.2 197 29.9
CBR_g23447 Chara braunii HOM05D003355 ORTHO05D006192 9.2e-13 78.2 218 28.4
Peaxi162Scf00616g00632 Petunia axillaris HOM05D003355 ORTHO05D006192 1.6e-12 77.4 218 28.9
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 2.0e-12 77.0 212 26.9
FvH4_6g02030 Fragaria vesca HOM05D017208 ORTHO05D025447 2.0e-12 77.0 199 28.1
MELO3C012627.2 Cucumis melo HOM05D003355 ORTHO05D006192 3.5e-12 76.3 195 29.2
FAN13G2254 Fragaria x ananassa HOM05D011179 ORTHO05D017929 7.8e-12 75.1 172 29.7
FAN13G3208 Fragaria x ananassa HOM05D011179 ORTHO05D017929 7.8e-12 75.1 172 29.7
BraA02t04852Z Brassica rapa HOM05D003355 ORTHO05D006192 1.0e-11 74.7 175 28.0
Prupe.2G125300 Prunus persica HOM05D003355 ORTHO05D013882 1.0e-11 74.7 157 30.6
RcHm_v2.0_Chr3g0481091 Rosa chinensis HOM05D011179 ORTHO05D017929 1.0e-11 74.7 165 26.7
RcHm_v2.0_Chr7g0223281 Rosa chinensis HOM05D011179 ORTHO05D017929 1.3e-11 74.3 123 30.9
CARHR204150 Cardamine hirsuta HOM05D003355 ORTHO05D006192 5.0e-11 72.4 189 25.9
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 6.6e-11 72.0 225 26.7
RcHm_v2.0_Chr7g0188481 Rosa chinensis HOM05D011179 ORTHO05D017929 6.6e-11 72.0 165 26.7
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 6.6e-11 72.0 176 31.2
MD04G1231500 Malus domestica HOM05D003355 ORTHO05D013882 8.6e-11 71.6 134 32.8
RcHm_v2.0_Chr7g0179721 Rosa chinensis HOM05D003355 ORTHO05D025419 1.1e-10 71.2 137 31.4
FvH4_3g45301 Fragaria vesca HOM05D003355 ORTHO05D013882 1.5e-10 70.9 97 37.1
Cre12.g508200 Chlamydomonas reinhardtii HOM05D003355 ORTHO05D006192 3.3e-10 69.7 209 27.8
FvH4_3g36460 Fragaria vesca HOM05D012211 ORTHO05D197262 3.3e-10 69.7 162 28.4
MCO15G216 Micromonas commoda HOM05D003355 ORTHO05D006192 7.3e-10 68.6 209 25.8
FvH4_5g09780 Fragaria vesca HOM05D011179 ORTHO05D017929 9.5e-10 68.2 155 27.7
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 9.5e-10 68.2 177 29.9
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 1.2e-09 67.8 171 28.7
C02p02380 Brassica napus HOM05D003355 ORTHO05D006192 1.2e-09 67.8 175 28.0
Prupe.6G351700 Prunus persica HOM05D003355 ORTHO05D013882 1.2e-09 67.8 187 28.3
FAN08G0872 Fragaria x ananassa HOM05D011179 ORTHO05D017929 1.6e-09 67.4 167 28.1
PRCOL_00006993 Prasinoderma coloniale HOM05D003355 ORTHO05D006192 2.8e-09 66.6 187 28.3
Cfa024749 Carpinus fangiana HOM05D003355 ORTHO05D006192 3.6e-09 66.2 223 29.1
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 3.6e-09 66.2 216 28.2
RcHm_v2.0_Chr7g0210441 Rosa chinensis HOM05D012211 ORTHO05D029661 6.2e-09 65.5 137 29.9
BolC2t06203H Brassica oleracea HOM05D003355 ORTHO05D006192 8.0e-09 65.1 175 28.6
FvH4_7g08170 Fragaria vesca HOM05D020185 ORTHO05D025519 8.0e-09 65.1 160 30.0
FAN10G3381 Fragaria x ananassa HOM05D020185 ORTHO05D025519 8.0e-09 65.1 159 29.6
Sc06g0001940 Simmondsia chinensis HOM05D003355 ORTHO05D006192 1.4e-08 64.3 140 33.6
FvH4_6g42520 Fragaria vesca HOM05D012211 ORTHO05D029661 1.8e-08 63.9 133 31.6
FAN05G2571 Fragaria x ananassa HOM05D012211 ORTHO05D045515 1.8e-08 63.9 162 27.2
CAN.G179.43 Capsicum annuum HOM05D003355 ORTHO05D006192 2.3e-08 63.5 139 34.5
FAN08G1058 Fragaria x ananassa HOM05D011179 ORTHO05D017929 3.1e-08 63.2 165 26.1
FAN14G1550 Fragaria x ananassa HOM05D012211 ORTHO05D204992 5.2e-08 62.4 133 30.8
AUR62032079 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.8e-08 62.0 137 31.4
AUR62034926 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.8e-08 62.0 137 31.4
Haze_10137 Corylus avellana HOM05D003355 ORTHO05D006192 6.8e-08 62.0 225 24.4
FvH4_3g36450 Fragaria vesca HOM05D012211 ORTHO05D013882 6.8e-08 62.0 152 30.9
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 6.8e-08 62.0 186 27.4
CARHR204610 Cardamine hirsuta HOM05D003355 ORTHO05D006192 1.2e-07 61.2 166 25.3
FvH4_6g42550 Fragaria vesca HOM05D012211 ORTHO05D045515 1.2e-07 61.2 162 25.9
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 1.2e-07 61.2 131 31.3
MD02G1015700 Malus domestica HOM05D003355 ORTHO05D247400 2.0e-07 60.5 160 23.8
CDE07G0559 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 3.4e-07 59.7 131 30.5
FAN25G2890 Fragaria x ananassa HOM05D012211 ORTHO05D205130 6.4e-06 55.5 108 30.6


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