Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0340881 Rosa chinensis HOM05D004321 ORTHO05D004889 1.3e-23 112.1 52 100.0
RcHm_v2.0_Chr1g0367621 Rosa chinensis HOM05D004321 ORTHO05D004889 1.3e-23 112.1 52 100.0
RcHm_v2.0_Chr6g0265721 Rosa chinensis HOM05D004321 ORTHO05D004889 2.9e-23 110.9 52 98.1
RcHm_v2.0_Chr3g0463581 Rosa chinensis HOM05D004321 ORTHO05D004889 6.5e-23 109.8 52 98.1
RcHm_v2.0_Chr2g0162431 Rosa chinensis HOM05D004321 ORTHO05D004889 1.5e-22 108.6 52 98.1
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 2.6e-19 97.8 52 90.4
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 6.5e-15 83.2 41 90.2
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 1.8e-12 75.1 43 79.1
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 4.0e-12 73.9 41 80.5
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 4.0e-12 73.9 41 82.9
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 4.0e-12 73.9 41 80.5
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 6.8e-12 73.2 45 73.3
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 6.8e-12 73.2 40 85.0
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 6.8e-12 73.2 47 74.5
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 1.2e-11 72.4 40 85.0
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 1.5e-11 72.0 40 80.0
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 1.5e-11 72.0 40 82.5
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 2.0e-11 71.6 40 82.5
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 2.0e-11 71.6 40 82.5
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 2.6e-11 71.2 40 80.0
RcHm_v2.0_Chr7g0198591 Rosa chinensis HOM05D004321 ORTHO05D004889 2.6e-11 71.2 29 100.0
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 2.6e-11 71.2 40 80.0
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 4.4e-11 70.5 40 80.0
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 4.4e-11 70.5 40 80.0
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 4.4e-11 70.5 40 80.0
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 5.7e-11 70.1 40 77.5
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 5.7e-11 70.1 40 82.5
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 5.7e-11 70.1 40 80.0
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 5.7e-11 70.1 40 75.0
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 9.8e-11 69.3 40 80.0
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 9.8e-11 69.3 41 75.6
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 9.8e-11 69.3 49 65.3
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 9.8e-11 69.3 49 65.3
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.3e-10 68.9 40 80.0
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 1.3e-10 68.9 40 77.5
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.3e-10 68.9 40 77.5
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.3e-10 68.9 40 77.5
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 1.7e-10 68.6 39 79.5
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 1.7e-10 68.6 39 79.5
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.2e-10 68.2 40 75.0
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 2.2e-10 68.2 40 77.5
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 2.2e-10 68.2 40 77.5
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 77.5
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 75.0
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 75.0
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 80.0
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 80.0
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 80.0
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 75.0
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 75.0
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 75.0
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 75.0
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 2.8e-10 67.8 40 75.0
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 3.7e-10 67.4 40 75.0
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 3.7e-10 67.4 40 77.5
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 3.7e-10 67.4 40 77.5
MBI14_g11678_MAGBIO Magnolia biondii HOM05D004321 ORTHO05D004889 4.8e-10 67.0 41 68.3
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 4.8e-10 67.0 40 75.0
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 6.3e-10 66.6 39 74.4
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 6.3e-10 66.6 40 75.0
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 8.3e-10 66.2 40 72.5
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 8.3e-10 66.2 40 72.5
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 8.3e-10 66.2 40 75.0
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 8.3e-10 66.2 40 75.0
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 8.3e-10 66.2 40 77.5
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 1.1e-09 65.9 40 75.0
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.1e-09 65.9 40 75.0
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 1.4e-09 65.5 40 77.5
Medtr4g063080 Medicago truncatula HOM05D004321 ORTHO05D004889 1.4e-09 65.5 40 72.5
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 1.4e-09 65.5 40 75.0
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 1.8e-09 65.1 40 75.0
CANSAT54G0658 Cannabis sativa HOM05D004321 ORTHO05D004889 1.8e-09 65.1 40 70.0
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 1.8e-09 65.1 40 72.5
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 1.8e-09 65.1 40 75.0
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 1.8e-09 65.1 40 75.0
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.8e-09 65.1 40 72.5
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 2.4e-09 64.7 40 72.5
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.4e-09 64.7 40 72.5
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 3.1e-09 64.3 40 70.0
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 4.1e-09 63.9 39 74.4
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 4.1e-09 63.9 39 74.4
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 4.1e-09 63.9 40 67.5
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 4.1e-09 63.9 40 67.5
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 4.1e-09 63.9 51 64.7
Manes.11G132700 Manihot esculenta HOM05D004321 ORTHO05D004889 4.1e-09 63.9 39 76.9
Oeu031979.1 Olea europaea HOM05D004321 ORTHO05D004889 4.1e-09 63.9 40 72.5
Oeu033243.1 Olea europaea HOM05D004321 ORTHO05D004889 4.1e-09 63.9 40 72.5
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 4.1e-09 63.9 40 67.5
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 4.1e-09 63.9 40 67.5
Cc01_g12570 Coffea canephora HOM05D004321 ORTHO05D004889 5.4e-09 63.5 40 70.0
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 5.4e-09 63.5 40 75.0
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 5.4e-09 63.5 40 70.0
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 7.0e-09 63.2 40 70.0
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 7.0e-09 63.2 40 70.0
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 7.0e-09 63.2 40 70.0
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 7.0e-09 63.2 40 70.0
COL.COLO4_18474 Corchorus olitorius HOM05D004321 ORTHO05D004889 7.0e-09 63.2 39 76.9
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 7.0e-09 63.2 40 70.0
Gorai.009G101000 Gossypium raimondii HOM05D004321 ORTHO05D004889 9.1e-09 62.8 48 64.6
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 9.1e-09 62.8 40 67.5
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 9.1e-09 62.8 40 67.5
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 9.1e-09 62.8 40 67.5
Thecc.09G325400 Theobroma cacao HOM05D004321 ORTHO05D004889 9.1e-09 62.8 39 76.9
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 1.2e-08 62.4 40 65.0
Manes.04G032700 Manihot esculenta HOM05D004321 ORTHO05D004889 1.2e-08 62.4 39 74.4
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 1.6e-08 62.0 36 72.2
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 2.0e-08 61.6 40 72.5
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 2.0e-08 61.6 40 70.0
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 2.0e-08 61.6 35 77.1
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 2.0e-08 61.6 40 67.5
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 2.7e-08 61.2 40 67.5
Aa31sc23G280 Aethionema arabicum HOM05D004321 ORTHO05D004889 4.5e-08 60.5 41 65.9
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 4.5e-08 60.5 36 72.2
PSO339G6107 Papaver somniferum HOM05D004321 ORTHO05D004889 4.5e-08 60.5 37 70.3
arahy.Tifrunner.gnm1.ann1.CZHF5K Arachis hypogaea HOM05D004321 ORTHO05D004889 5.9e-08 60.1 40 67.5
arahy.Tifrunner.gnm1.ann1.NFV9ZK Arachis hypogaea HOM05D004321 ORTHO05D004889 5.9e-08 60.1 40 67.5
Gohir.A05G097300 Gossypium hirsutum HOM05D004321 ORTHO05D004889 5.9e-08 60.1 39 71.8
Gohir.A05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 5.9e-08 60.1 39 71.8
Gohir.D03G128000 Gossypium hirsutum HOM05D004321 ORTHO05D004889 5.9e-08 60.1 39 71.8
Gohir.D05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 5.9e-08 60.1 39 71.8
Gohir.D05G097500 Gossypium hirsutum HOM05D004321 ORTHO05D004889 5.9e-08 60.1 39 71.8
Gorai.003G134700 Gossypium raimondii HOM05D004321 ORTHO05D004889 5.9e-08 60.1 39 71.8
Gorai.009G101100 Gossypium raimondii HOM05D004321 ORTHO05D004889 5.9e-08 60.1 39 71.8
CAN.G711.6 Capsicum annuum HOM05D004321 ORTHO05D004889 1.0e-07 59.3 40 62.5
Gohir.A03G040001 Gossypium hirsutum HOM05D004321 ORTHO05D004889 1.3e-07 58.9 39 69.2
AL5G25260 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 2.2e-07 58.2 40 65.0
AL8G36130 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 2.2e-07 58.2 40 65.0
AT3G46430 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 2.2e-07 58.2 40 65.0
AT5G59613 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 2.2e-07 58.2 40 65.0
CARHR154850 Cardamine hirsuta HOM05D004321 ORTHO05D004889 2.2e-07 58.2 40 65.0
Thhalv10015813m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 2.2e-07 58.2 40 65.0
Aa31LG4G15480 Aethionema arabicum HOM05D004321 ORTHO05D004889 2.9e-07 57.8 40 65.0
BcaB01g04562 Brassica carinata HOM05D004321 ORTHO05D004889 2.9e-07 57.8 40 62.5
BcaB08g36235 Brassica carinata HOM05D004321 ORTHO05D004889 2.9e-07 57.8 44 59.1
BcaC04g19749 Brassica carinata HOM05D004321 ORTHO05D004889 2.9e-07 57.8 44 59.1
A02p07010 Brassica napus HOM05D004321 ORTHO05D004889 2.9e-07 57.8 40 62.5
C09p52020 Brassica napus HOM05D004321 ORTHO05D004889 2.9e-07 57.8 44 59.1
BolC9t58064H Brassica oleracea HOM05D004321 ORTHO05D004889 2.9e-07 57.8 44 59.1
BraA02t05781Z Brassica rapa HOM05D004321 ORTHO05D004889 2.9e-07 57.8 40 62.5
THA.LOC109116048 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 2.9e-07 57.8 40 65.0
THA.LOC104814874 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 3.8e-07 57.4 40 62.5
BcaC01g06508 Brassica carinata HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
BcaC03g13996 Brassica carinata HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
A03p11570 Brassica napus HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
A10p16870 Brassica napus HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
C02p12350 Brassica napus HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
C03p13450 Brassica napus HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
BolC2t07335H Brassica oleracea HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
BolC3t13802H Brassica oleracea HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
BraA03t10470Z Brassica rapa HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
BraA10t43766Z Brassica rapa HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
Carub.0005s1223 Capsella rubella HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
Carub.0008s2029 Capsella rubella HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
Sp5g15250 Schrenkiella parvula HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
Sp6g21320 Schrenkiella parvula HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 62.5
Zm00001eb355680 Zea mays HOM05D004321 ORTHO05D004889 6.5e-07 56.6 40 60.0
CARHR273120 Cardamine hirsuta HOM05D004321 ORTHO05D004889 1.1e-06 55.8 40 62.5
Thhalv10003016m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 1.1e-06 55.8 40 62.5
BcaB08g36233 Brassica carinata HOM05D004321 ORTHO05D004889 1.5e-06 55.5 40 60.0
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.5e-06 55.5 46 52.2
Peaxi162Scf01003g00014 Petunia axillaris HOM05D004321 ORTHO05D004889 4.2e-06 53.9 40 60.0
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 5.5e-06 53.5 29 72.4


User provided reference genes

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