Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0367541 Rosa chinensis HOM05D007741 ORTHO05D011083 2.6e-155 552.0 274 100.0
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 4.0e-39 166.0 118 69.5
RcHm_v2.0_Chr4g0427731 Rosa chinensis HOM05D007741 ORTHO05D006912 9.9e-38 161.4 141 61.7
RcHm_v2.0_Chr1g0351211 Rosa chinensis HOM05D007741 ORTHO05D015647 1.0e-26 124.8 181 47.0
FAN13G2213 Fragaria x ananassa HOM05D007741 ORTHO05D208410 2.7e-19 100.1 128 45.3
RcHm_v2.0_Chr6g0279711 Rosa chinensis HOM05D007741 ORTHO05D016318 3.6e-19 99.8 169 43.2
RcHm_v2.0_Chr1g0346381 Rosa chinensis HOM05D007741 ORTHO05D016318 4.6e-19 99.4 167 40.7
RcHm_v2.0_Chr1g0339901 Rosa chinensis HOM05D007741 ORTHO05D016318 6.1e-19 99.0 173 40.5
RcHm_v2.0_Chr2g0119361 Rosa chinensis HOM05D007741 ORTHO05D016318 6.1e-19 99.0 173 40.5
RcHm_v2.0_Chr4g0423141 Rosa chinensis HOM05D007741 ORTHO05D016318 6.1e-19 99.0 173 40.5
RcHm_v2.0_Chr6g0295101 Rosa chinensis HOM05D007741 ORTHO05D035834 7.9e-19 98.6 91 59.3
RcHm_v2.0_Chr2g0132851 Rosa chinensis HOM05D007741 ORTHO05D348147 2.3e-18 97.1 94 57.4
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 2.3e-18 97.1 91 58.2
RcHm_v2.0_Chr3g0465101 Rosa chinensis HOM05D007741 ORTHO05D342996 5.7e-17 92.4 151 40.4
RcHm_v2.0_Chr7g0204591 Rosa chinensis HOM05D007741 ORTHO05D016318 1.3e-16 91.3 160 43.8
FAN23G1385 Fragaria x ananassa HOM05D015953 ORTHO05D019200 4.8e-16 89.4 98 54.1
RcHm_v2.0_Chr3g0459951 Rosa chinensis HOM05D007741 ORTHO05D342834 1.4e-15 87.8 80 60.0
FvH4_5g00140 Fragaria vesca HOM05D007761 ORTHO05D015647 1.5e-14 84.3 155 38.7
FvH4_6g29890 Fragaria vesca HOM05D007741 ORTHO05D014215 3.4e-14 83.2 99 49.5
FAN10G2127 Fragaria x ananassa HOM05D022609 ORTHO05D029410 4.5e-14 82.8 69 56.5
FAN12G2273 Fragaria x ananassa HOM05D007741 ORTHO05D209008 5.9e-14 82.4 92 48.9
RcHm_v2.0_Chr5g0050261 Rosa chinensis HOM05D007741 ORTHO05D014215 5.9e-14 82.4 116 45.7
RcHm_v2.0_Chr4g0424711 Rosa chinensis HOM05D007741 ORTHO05D006912 1.7e-13 80.9 57 70.2
FAN24G0121 Fragaria x ananassa HOM05D007741 ORTHO05D208107 2.2e-13 80.5 166 38.0
RcHm_v2.0_Chr1g0358041 Rosa chinensis HOM05D007741 ORTHO05D347005 2.2e-13 80.5 244 33.6
FAN22G0864 Fragaria x ananassa HOM05D007741 ORTHO05D014215 5.0e-13 79.3 96 50.0
RcHm_v2.0_Chr4g0422711 Rosa chinensis HOM05D007741 ORTHO05D011461 1.4e-12 77.8 119 43.7
FAN11G1101 Fragaria x ananassa HOM05D008445 ORTHO05D010376 2.5e-12 77.0 229 33.2
FvH4_4g07610 Fragaria vesca HOM05D008445 ORTHO05D011083 4.2e-12 76.3 229 33.2
FAN07G0152 Fragaria x ananassa HOM05D008445 ORTHO05D011083 5.5e-12 75.9 229 33.2
FAN15G3031 Fragaria x ananassa HOM05D007741 ORTHO05D014215 5.5e-12 75.9 96 44.8
RcHm_v2.0_Chr4g0423271 Rosa chinensis HOM05D007741 ORTHO05D346686 5.5e-12 75.9 159 37.1
FAN03G2046 Fragaria x ananassa HOM05D008445 ORTHO05D011083 7.2e-12 75.5 291 29.9
FAN05G4712 Fragaria x ananassa HOM05D007761 ORTHO05D022710 7.2e-12 75.5 60 55.0
FAN11G0182 Fragaria x ananassa HOM05D007741 ORTHO05D016318 1.2e-11 74.7 104 48.1
FAN22G1765 Fragaria x ananassa HOM05D007741 ORTHO05D016314 1.6e-11 74.3 105 44.8
FAN12G3425 Fragaria x ananassa HOM05D008445 ORTHO05D011083 4.7e-11 72.8 115 43.5
FAN02G4306 Fragaria x ananassa HOM05D008445 ORTHO05D011083 6.1e-11 72.4 230 32.6
FAN15G0652 Fragaria x ananassa HOM05D007741 ORTHO05D014215 6.1e-11 72.4 98 39.8
FAN19G1218 Fragaria x ananassa HOM05D007741 ORTHO05D035834 6.1e-11 72.4 86 50.0
FAN21G0226 Fragaria x ananassa HOM05D007741 ORTHO05D208582 7.9e-11 72.0 104 43.3
FAN17G1839 Fragaria x ananassa HOM05D010166 ORTHO05D204969 1.0e-10 71.6 174 35.6
FAN10G3035 Fragaria x ananassa HOM05D010166 ORTHO05D207531 1.8e-10 70.9 178 35.4
FAN25G2115 Fragaria x ananassa HOM05D007741 ORTHO05D014215 1.8e-10 70.9 76 48.7
RcHm_v2.0_Chr3g0447381 Rosa chinensis HOM05D007761 ORTHO05D022710 2.3e-10 70.5 53 62.3
RcHm_v2.0_Chr4g0405571 Rosa chinensis HOM05D007741 ORTHO05D343499 3.0e-10 70.1 137 40.1
FAN06G3290 Fragaria x ananassa HOM05D007741 ORTHO05D203466 3.9e-10 69.7 101 43.6
FAN11G1752 Fragaria x ananassa HOM05D007741 ORTHO05D204122 3.9e-10 69.7 77 51.9
FAN08G0049 Fragaria x ananassa HOM05D007741 ORTHO05D210836 6.7e-10 68.9 122 36.1
FAN05G2747 Fragaria x ananassa HOM05D015953 ORTHO05D202276 8.8e-10 68.6 82 52.4
FAN06G2936 Fragaria x ananassa HOM05D007741 ORTHO05D203393 8.8e-10 68.6 58 63.8
FAN14G1338 Fragaria x ananassa HOM05D008445 ORTHO05D011083 8.8e-10 68.6 259 29.3
FAN14G3085 Fragaria x ananassa HOM05D007741 ORTHO05D201723 1.1e-09 68.2 110 43.6
FAN27G3337 Fragaria x ananassa HOM05D007741 ORTHO05D016314 1.1e-09 68.2 70 54.3
FAN04G0311 Fragaria x ananassa HOM05D007741 ORTHO05D209742 2.6e-09 67.0 122 35.2
FAN18G4008 Fragaria x ananassa HOM05D007741 ORTHO05D200570 2.6e-09 67.0 93 44.1
FAN06G3588 Fragaria x ananassa HOM05D007741 ORTHO05D201100 3.3e-09 66.6 74 55.4
FAN11G3088 Fragaria x ananassa HOM05D010166 ORTHO05D210407 3.3e-09 66.6 164 35.4
FAN18G1114 Fragaria x ananassa HOM05D008445 ORTHO05D020651 5.7e-09 65.9 110 41.8
FAN06G3287 Fragaria x ananassa HOM05D007761 ORTHO05D011461 7.4e-09 65.5 97 42.3
FAN12G3907 Fragaria x ananassa HOM05D022609 ORTHO05D029410 7.4e-09 65.5 84 47.6
FAN15G1618 Fragaria x ananassa HOM05D007761 ORTHO05D011461 7.4e-09 65.5 84 47.6
FAN23G1770 Fragaria x ananassa HOM05D008445 ORTHO05D011083 7.4e-09 65.5 213 31.5
FAN01G0838 Fragaria x ananassa HOM05D008445 ORTHO05D011083 9.7e-09 65.1 227 30.8
FAN15G0375 Fragaria x ananassa HOM05D007741 ORTHO05D014215 9.7e-09 65.1 83 44.6
FAN01G0683 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.3e-08 64.7 97 42.3
FAN12G0192 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.3e-08 64.7 97 42.3
FAN05G5109 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.7e-08 64.3 82 45.1
FAN09G2793 Fragaria x ananassa HOM05D007741 ORTHO05D204231 1.7e-08 64.3 73 49.3
FAN10G3275 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.7e-08 64.3 85 44.7
FAN18G4536 Fragaria x ananassa HOM05D007761 ORTHO05D015647 1.7e-08 64.3 182 34.1
FAN10G2132 Fragaria x ananassa HOM05D007741 ORTHO05D204785 2.2e-08 63.9 77 44.2
FAN05G2149 Fragaria x ananassa HOM05D007741 ORTHO05D016318 2.8e-08 63.5 51 62.7
FAN09G4565 Fragaria x ananassa HOM05D007761 ORTHO05D015647 2.8e-08 63.5 129 36.4
FAN14G1493 Fragaria x ananassa HOM05D001253 ORTHO05D001086 3.7e-08 63.2 82 45.1
FAN25G1610 Fragaria x ananassa HOM05D007761 ORTHO05D011461 3.7e-08 63.2 84 45.2
RcHm_v2.0_Chr1g0319561 Rosa chinensis HOM05D007741 ORTHO05D342843 3.7e-08 63.2 121 35.5
RcHm_v2.0_Chr4g0442201 Rosa chinensis HOM05D028330 ORTHO05D342349 3.7e-08 63.2 233 30.5
FAN24G1718 Fragaria x ananassa HOM05D000542 ORTHO05D000202 4.8e-08 62.8 67 53.7
FAN05G2318 Fragaria x ananassa HOM05D008445 ORTHO05D022710 6.3e-08 62.4 57 52.6
FAN07G1261 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.1e-07 61.6 85 44.7
RcHm_v2.0_Chr4g0413331 Rosa chinensis HOM05D028330 ORTHO05D343215 1.1e-07 61.6 260 31.2
FAN20G0086 Fragaria x ananassa HOM05D007761 ORTHO05D035530 1.4e-07 61.2 136 32.4
RcHm_v2.0_Chr1g0320181 Rosa chinensis HOM05D028330 ORTHO05D341788 2.4e-07 60.5 154 33.1
FAN24G2548 Fragaria x ananassa HOM05D000542 ORTHO05D000202 4.1e-07 59.7 67 53.7
FAN13G3075 Fragaria x ananassa HOM05D001229 ORTHO05D001374 5.3e-07 59.3 78 41.0
FAN22G0676 Fragaria x ananassa HOM05D007741 ORTHO05D204708 5.3e-07 59.3 76 47.4
FAN22G2406 Fragaria x ananassa HOM05D007741 ORTHO05D210186 5.3e-07 59.3 76 47.4
FAN24G3283 Fragaria x ananassa HOM05D007741 ORTHO05D201185 5.3e-07 59.3 74 47.3
FAN04G2478 Fragaria x ananassa HOM05D007761 ORTHO05D011461 6.9e-07 58.9 70 50.0
FAN11G3515 Fragaria x ananassa HOM05D008445 ORTHO05D011083 6.9e-07 58.9 207 30.4
FAN12G3955 Fragaria x ananassa HOM05D007761 ORTHO05D015647 6.9e-07 58.9 108 38.9
FAN28G2015 Fragaria x ananassa HOM05D010166 ORTHO05D205652 6.9e-07 58.9 87 40.2
RcHm_v2.0_Chr6g0280951 Rosa chinensis HOM05D007761 ORTHO05D011461 6.9e-07 58.9 116 38.8
FAN27G1253 Fragaria x ananassa HOM05D007761 ORTHO05D011461 9.1e-07 58.5 71 49.3
FAN16G3080 Fragaria x ananassa HOM05D007761 ORTHO05D000537 1.5e-06 57.8 70 48.6
FAN27G1171 Fragaria x ananassa HOM05D007761 ORTHO05D011083 1.5e-06 57.8 84 42.9
FAN11G1680 Fragaria x ananassa HOM05D007741 ORTHO05D204100 2.0e-06 57.4 66 50.0
FAN16G2345 Fragaria x ananassa HOM05D007761 ORTHO05D022710 2.0e-06 57.4 109 38.5
FAN04G2389 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.6e-06 57.0 169 29.6
FAN23G1305 Fragaria x ananassa HOM05D007528 ORTHO05D029410 2.6e-06 57.0 51 58.8
RcHm_v2.0_Chr4g0423981 Rosa chinensis HOM05D007741 ORTHO05D348048 2.6e-06 57.0 197 32.5
RcHm_v2.0_Chr4g0422751 Rosa chinensis HOM05D007741 ORTHO05D016318 3.4e-06 56.6 92 41.3
FAN02G0387 Fragaria x ananassa HOM05D007761 ORTHO05D011083 4.5e-06 56.2 94 40.4
FvH4_6g19980 Fragaria vesca HOM05D007761 ORTHO05D035530 5.9e-06 55.8 56 48.2
FAN14G5498 Fragaria x ananassa HOM05D001557 ORTHO05D001299 5.9e-06 55.8 56 48.2
FAN03G0027 Fragaria x ananassa HOM05D060314 ORTHO05D022710 7.7e-06 55.5 58 50.0
FAN15G2010 Fragaria x ananassa HOM05D000542 ORTHO05D000202 7.7e-06 55.5 66 45.5


User provided reference genes

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