Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 1.1e-68 263.1 126 100.0
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 2.2e-64 248.8 126 94.4
RcHm_v2.0_Chr1g0354331 Rosa chinensis HOM05D049424 ORTHO05D347009 1.9e-20 102.8 67 77.6
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 5.3e-10 68.2 53 66.0
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 7.6e-09 64.3 55 60.0
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 9.9e-09 63.9 53 60.4
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 9.9e-09 63.9 55 60.0
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.9e-08 62.4 53 60.4
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.9e-08 62.4 53 60.4
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 3.8e-08 62.0 53 60.4
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.8e-08 62.0 53 60.4
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.8e-08 62.0 53 60.4
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.8e-08 62.0 53 60.4
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 3.8e-08 62.0 53 60.4
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 6.4e-08 61.2 56 57.1
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 6.4e-08 61.2 42 69.0
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 8.4e-08 60.8 55 56.4
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 8.4e-08 60.8 55 56.4
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 8.4e-08 60.8 55 56.4
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.4e-07 60.1 53 58.5
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.4e-07 60.1 53 54.7
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 1.4e-07 60.1 53 58.5
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.9e-07 59.7 55 56.4
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.9e-07 59.7 55 56.4
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.9e-07 59.7 55 56.4
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.9e-07 59.7 55 56.4
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.9e-07 59.7 53 56.6
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 2.4e-07 59.3 53 56.6
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 2.4e-07 59.3 53 56.6
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 2.4e-07 59.3 53 56.6
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 2.4e-07 59.3 53 56.6
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.4e-07 59.3 53 58.5
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 3.2e-07 58.9 53 56.6
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 3.2e-07 58.9 53 56.6
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 3.2e-07 58.9 53 54.7
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 4.2e-07 58.5 56 53.6
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 4.2e-07 58.5 53 54.7
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 4.2e-07 58.5 53 56.6
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 4.2e-07 58.5 53 56.6
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 4.2e-07 58.5 53 54.7
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 4.2e-07 58.5 53 56.6
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 5.5e-07 58.2 53 50.9
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 5.5e-07 58.2 53 56.6
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 5.5e-07 58.2 53 54.7
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 5.5e-07 58.2 53 52.8
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 5.5e-07 58.2 53 56.6
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 7.1e-07 57.8 105 38.1
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 7.1e-07 57.8 53 54.7
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 7.1e-07 57.8 53 54.7
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 7.1e-07 57.8 53 54.7
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 7.1e-07 57.8 55 54.5
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 7.1e-07 57.8 53 54.7
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 7.1e-07 57.8 53 56.6
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 7.1e-07 57.8 53 52.8
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 7.1e-07 57.8 55 54.5
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 9.3e-07 57.4 56 50.0
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 9.3e-07 57.4 53 54.7
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 9.3e-07 57.4 53 54.7
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 9.3e-07 57.4 53 54.7
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 9.3e-07 57.4 53 56.6
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.2e-06 57.0 53 54.7
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.2e-06 57.0 42 64.3
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.2e-06 57.0 53 54.7
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.2e-06 57.0 53 54.7
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.2e-06 57.0 53 54.7
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.2e-06 57.0 53 54.7
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.2e-06 57.0 53 54.7
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.2e-06 57.0 53 54.7
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 1.2e-06 57.0 53 54.7
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.6e-06 56.6 70 45.7
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.6e-06 56.6 53 54.7
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.6e-06 56.6 53 52.8
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.6e-06 56.6 53 56.6
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 1.6e-06 56.6 53 52.8
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 2.1e-06 56.2 41 65.9
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 2.1e-06 56.2 53 54.7
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 2.1e-06 56.2 68 47.1
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 2.1e-06 56.2 68 47.1
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 2.1e-06 56.2 68 47.1
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 2.1e-06 56.2 56 51.8
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 2.1e-06 56.2 42 64.3
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.1e-06 56.2 41 63.4
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 2.1e-06 56.2 41 63.4
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 2.7e-06 55.8 41 65.9
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 2.7e-06 55.8 53 49.1
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 3.5e-06 55.5 53 54.7
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.5e-06 55.5 53 54.7
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 4.6e-06 55.1 53 54.7
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 4.6e-06 55.1 53 54.7
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 4.6e-06 55.1 53 54.7
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 4.6e-06 55.1 53 54.7
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 4.6e-06 55.1 53 54.7
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.6e-06 55.1 52 55.8
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.6e-06 55.1 52 55.8
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 7.9e-06 54.3 53 54.7
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 7.9e-06 54.3 53 52.8


User provided reference genes

Program Settings