Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 1.3e-27 125.6 59 100.0
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 3.8e-27 124.0 59 98.3
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 2.5e-23 111.3 56 91.1
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 2.7e-17 91.3 45 95.6
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 3.6e-17 90.9 46 93.5
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 1.1e-15 85.9 52 82.7
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 7.4e-15 83.2 52 78.8
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 7.4e-15 83.2 52 78.8
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 7.4e-15 83.2 52 78.8
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 9.7e-15 82.8 52 78.8
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 1.7e-14 82.0 52 73.1
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 2.2e-14 81.6 52 76.9
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 2.8e-14 81.3 52 76.9
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 2.8e-14 81.3 52 76.9
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 2.8e-14 81.3 52 75.0
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 3.7e-14 80.9 55 72.7
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 3.7e-14 80.9 55 72.7
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 4.8e-14 80.5 52 75.0
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 4.8e-14 80.5 52 76.9
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 6.3e-14 80.1 52 76.9
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 6.3e-14 80.1 57 70.2
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 6.3e-14 80.1 64 67.2
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 6.3e-14 80.1 52 76.9
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 6.3e-14 80.1 52 76.9
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 8.2e-14 79.7 52 75.0
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 8.2e-14 79.7 52 75.0
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.1e-13 79.3 64 67.2
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 1.8e-13 78.6 52 75.0
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 2.4e-13 78.2 52 71.2
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 3.1e-13 77.8 52 69.2
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 3.1e-13 77.8 52 69.2
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 3.1e-13 77.8 52 76.9
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 3.1e-13 77.8 52 73.1
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 5.3e-13 77.0 59 66.1
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 6.9e-13 76.6 52 73.1
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 6.9e-13 76.6 52 71.2
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 6.9e-13 76.6 52 71.2
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 9.1e-13 76.3 52 69.2
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 9.1e-13 76.3 52 73.1
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 1.2e-12 75.9 52 73.1
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 1.5e-12 75.5 52 69.2
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 1.5e-12 75.5 52 71.2
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 1.5e-12 75.5 52 67.3
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 1.5e-12 75.5 52 67.3
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.0e-12 75.1 52 71.2
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 2.0e-12 75.1 52 69.2
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.6e-12 74.7 54 66.7
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 2.6e-12 74.7 54 66.7
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.6e-12 74.7 52 69.2
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 2.6e-12 74.7 52 69.2
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.4e-12 74.3 52 65.4
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 3.4e-12 74.3 52 69.2
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 3.4e-12 74.3 52 67.3
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 4.5e-12 73.9 52 63.5
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 4.5e-12 73.9 54 63.0
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 7.7e-12 73.2 52 67.3
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 7.7e-12 73.2 52 67.3
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 1.0e-11 72.8 52 67.3
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 1.7e-11 72.0 52 63.5
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 2.2e-11 71.6 52 63.5
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 2.9e-11 71.2 52 65.4
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 2.9e-11 71.2 52 65.4
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 2.9e-11 71.2 52 65.4
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 2.9e-11 71.2 52 61.5
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 3.8e-11 70.9 52 61.5
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 3.8e-11 70.9 52 63.5
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 5.0e-11 70.5 52 63.5
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 6.5e-11 70.1 52 61.5
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 8.5e-11 69.7 52 59.6
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.9e-10 68.6 52 61.5
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 4.2e-10 67.4 47 68.1
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 7.2e-10 66.6 71 49.3
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 2.7e-09 64.7 46 65.2
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 6.1e-09 63.5 56 53.6
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 1.4e-08 62.4 65 52.3
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.3e-08 61.6 46 63.0
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 3.0e-08 61.2 49 57.1
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 6.7e-08 60.1 52 57.7
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 6.7e-08 60.1 84 39.3
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 2.0e-07 58.5 51 58.8
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 3.3e-07 57.8 52 55.8
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 3.3e-07 57.8 86 38.4
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 4.4e-07 57.4 51 56.9
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 4.4e-07 57.4 51 56.9
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 4.4e-07 57.4 51 56.9
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 4.4e-07 57.4 51 56.9
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 4.4e-07 57.4 51 56.9
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 4.4e-07 57.4 51 56.9
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 4.4e-07 57.4 51 56.9
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 4.4e-07 57.4 51 56.9
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 4.4e-07 57.4 51 58.8
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 9.7e-07 56.2 51 54.9


User provided reference genes

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