Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 5.1e-38 162.2 238 100.0
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.7e-31 139.8 240 92.5
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 1.7e-30 137.1 240 92.1
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.7e-30 137.1 240 92.1
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.7e-30 137.1 240 92.1
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.7e-30 137.1 240 92.1
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.2e-24 116.3 226 86.7
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.3e-21 106.3 237 86.9
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 3.6e-20 102.8 53 86.8
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 3.6e-20 102.8 53 86.8
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 5.3e-19 99.0 238 84.9
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 6.9e-19 98.6 137 90.5
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.9e-19 98.6 137 89.1
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 9.9e-18 94.7 137 89.1
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 3.8e-17 92.8 54 81.5
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 4.9e-17 92.4 54 75.9
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.9e-16 90.5 241 82.2
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 2.4e-16 90.1 53 75.5
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 4.2e-16 89.4 54 75.9
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.4e-16 89.0 54 75.9
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 1.6e-15 87.4 54 74.1
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 4.6e-15 85.9 54 72.2
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.3e-14 83.6 54 70.4
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.9e-14 82.8 54 70.4
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 8.7e-14 81.6 237 83.5
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.1e-13 81.3 54 72.2
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.4e-13 78.6 54 66.7
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.8e-12 76.6 54 68.5
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 3.7e-12 76.3 54 70.4
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 3.7e-12 76.3 54 70.4
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 3.7e-12 76.3 54 66.7
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 6.2e-12 75.5 54 64.8
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 3.4e-10 69.7 235 74.9
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 8.4e-09 65.1 61 57.4
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 9.3e-08 61.6 54 59.3
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 9.3e-08 61.6 55 60.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 9.3e-08 61.6 58 58.6
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 9.3e-08 61.6 43 67.4
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.3e-08 61.6 48 68.8
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 1.2e-07 61.2 49 63.3
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.2e-07 61.2 50 68.0
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.1e-07 60.5 52 63.5
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 2.1e-07 60.5 52 63.5
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 2.7e-07 60.1 61 52.5
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.5e-07 59.7 50 64.0
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 4.6e-07 59.3 66 56.1
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 4.6e-07 59.3 43 65.1
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 4.6e-07 59.3 43 65.1
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 4.6e-07 59.3 43 65.1
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 4.6e-07 59.3 43 65.1
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 6.0e-07 58.9 40 62.5
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 6.0e-07 58.9 50 64.0
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 7.9e-07 58.5 43 62.8
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 7.9e-07 58.5 48 64.6
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.0e-06 58.2 43 62.8
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 1.0e-06 58.2 43 62.8
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 1.3e-06 57.8 44 61.4
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.8e-06 57.4 55 56.4
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.3e-06 57.0 43 60.5
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.3e-06 57.0 43 60.5
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 2.3e-06 57.0 43 60.5
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 2.3e-06 57.0 43 60.5
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.3e-06 57.0 43 60.5
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 2.3e-06 57.0 43 60.5
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 3.0e-06 56.6 44 59.1
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 3.0e-06 56.6 55 56.4
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.9e-06 56.2 55 56.4
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 3.9e-06 56.2 43 58.1
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 3.9e-06 56.2 58 55.2
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 5.1e-06 55.8 50 54.0
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 5.1e-06 55.8 54 59.3
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 5.1e-06 55.8 60 51.7
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 5.1e-06 55.8 60 56.7
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 5.1e-06 55.8 50 60.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 6.7e-06 55.5 43 60.5
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 6.7e-06 55.5 55 54.5
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 6.7e-06 55.5 43 60.5
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 6.7e-06 55.5 59 54.2
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 6.7e-06 55.5 47 68.1
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 8.7e-06 55.1 44 59.1
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 8.7e-06 55.1 43 58.1
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 8.7e-06 55.1 43 58.1
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 8.7e-06 55.1 43 60.5
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 8.7e-06 55.1 43 60.5


User provided reference genes

Program Settings