Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 3.4e-25 117.5 56 100.0
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 3.3e-20 100.9 56 83.9
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 4.7e-19 97.1 56 78.6
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 1.5e-17 92.0 52 76.9
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 9.8e-17 89.4 55 70.9
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 1.3e-16 89.0 48 81.2
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 1.3e-16 89.0 51 76.5
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 1.3e-16 89.0 53 71.7
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 1.3e-16 89.0 53 73.6
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 1.7e-16 88.6 55 76.4
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 1.7e-16 88.6 56 73.2
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 1.7e-16 88.6 56 69.6
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 2.9e-16 87.8 49 79.6
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 4.9e-16 87.0 56 75.0
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 6.4e-16 86.7 56 73.2
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 1.1e-15 85.9 48 77.1
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 1.4e-15 85.5 51 72.5
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 1.9e-15 85.1 42 85.7
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 1.9e-15 85.1 42 85.7
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 1.9e-15 85.1 52 73.1
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 1.9e-15 85.1 53 71.7
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 4.1e-15 84.0 49 73.5
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 7.0e-15 83.2 52 69.2
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 1.2e-14 82.4 49 73.5
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 1.2e-14 82.4 44 81.8
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 1.2e-14 82.4 54 63.0
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 1.2e-14 82.4 54 63.0
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 1.2e-14 82.4 55 70.9
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 1.6e-14 82.0 52 65.4
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.0e-14 81.6 52 73.1
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 4.6e-14 80.5 45 82.2
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 4.6e-14 80.5 48 70.8
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 4.6e-14 80.5 48 72.9
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 6.0e-14 80.1 54 61.1
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 6.0e-14 80.1 43 79.1
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 7.8e-14 79.7 48 68.8
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 7.8e-14 79.7 48 68.8
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 7.8e-14 79.7 43 79.1
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 1.0e-13 79.3 54 63.0
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 1.0e-13 79.3 47 72.3
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 1.3e-13 79.0 49 69.4
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 1.7e-13 78.6 42 81.0
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 2.3e-13 78.2 51 68.6
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 2.3e-13 78.2 51 58.8
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 2.3e-13 78.2 43 79.1
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 3.0e-13 77.8 46 69.6
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 3.0e-13 77.8 46 69.6
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 3.0e-13 77.8 46 69.6
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 3.9e-13 77.4 46 67.4
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 5.0e-13 77.0 47 68.1
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 8.6e-13 76.3 55 60.0
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 1.1e-12 75.9 46 65.2
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 1.1e-12 75.9 46 65.2
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 1.5e-12 75.5 46 65.2
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 1.5e-12 75.5 46 65.2
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 1.9e-12 75.1 46 65.2
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 2.5e-12 74.7 39 82.1
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 2.5e-12 74.7 43 72.1
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 2.5e-12 74.7 47 66.0
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 3.3e-12 74.3 44 68.2
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 5.6e-12 73.6 41 73.2
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 8.0e-11 69.7 39 74.4
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 1.8e-10 68.6 43 69.8
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 3.7e-08 60.8 77 41.6
HanXRQChr16g0507891 Helianthus annuus HOM05D008199 ORTHO05D010334 4.9e-08 60.5 52 55.8
Pp3c9_50 Physcomitrium patens HOM05D008199 ORTHO05D010334 4.1e-07 57.4 37 64.9


User provided reference genes

Program Settings