Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 0.0e+00 2558.1 1304 100.0
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 0.0e+00 1948.7 1308 78.9
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 0.0e+00 1947.2 1308 78.7
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 0.0e+00 1939.9 1308 78.4
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 0.0e+00 1939.9 1307 78.7
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1899.4 1306 77.2
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 0.0e+00 1509.6 1337 64.2
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 0.0e+00 1309.7 1287 59.4
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 0.0e+00 1258.0 1303 58.0
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 1.5e-288 996.9 1376 49.2
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 4.6e-266 922.2 1407 45.9
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 3.1e-262 909.4 1365 47.0
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 2.6e-261 906.4 1526 43.2
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 6.0e-250 868.6 1525 41.4
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 4.5e-237 825.9 1380 43.5
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.1e-235 821.2 1380 43.3
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 7.2e-219 765.4 1422 40.7
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 3.7e-215 753.1 1369 41.1
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 6.9e-214 748.8 1434 40.9
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 3.8e-212 743.0 1434 40.4
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 7.2e-211 738.8 1507 38.2
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.4e-209 734.6 1318 41.7
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.0e-209 733.4 1424 40.0
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 4.8e-207 726.1 1318 41.8
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 4.8e-207 726.1 1391 40.4
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 5.3e-206 722.6 1437 38.8
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 3.5e-205 719.9 1433 40.0
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 1.2e-202 711.4 1440 39.7
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.6e-202 711.1 1396 39.8
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 2.3e-201 707.2 1276 40.3
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 3.8e-196 689.9 1315 41.0
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 2.5e-195 687.2 1436 38.3
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.8e-190 671.0 1314 40.1
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 1.0e-188 665.2 1390 40.0
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 1.2e-186 658.3 1441 39.0
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 8.0e-186 655.6 1408 38.6
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 8.0e-186 655.6 1379 38.7
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 4.4e-184 649.8 1346 40.6
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 2.2e-183 647.5 1347 40.5
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 4.5e-181 639.8 1383 38.7
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.0e-177 628.6 1450 36.7
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.0e-177 628.6 1390 37.8
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.3e-172 611.7 1467 35.6
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.3e-172 611.7 1371 38.1
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 6.0e-165 586.3 1376 37.9
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 5.0e-164 583.2 1117 41.5
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 6.0e-157 559.7 1391 35.7
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 1.5e-155 555.1 1380 37.3
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 5.8e-152 543.1 1411 35.6
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 2.0e-136 491.5 1341 34.4
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 2.2e-135 488.0 1394 36.1
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 7.8e-133 479.6 1387 33.2
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 1.9e-131 474.9 1326 33.5
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 9.6e-131 472.6 1428 33.1
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 5.4e-126 456.8 1349 33.4
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 3.9e-124 450.7 1429 30.9
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 8.4e-119 433.0 1388 32.8
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 5.5e-118 430.3 1385 32.4
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.2e-117 429.1 1376 32.5
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 4.3e-115 420.6 1337 32.5
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 3.7e-114 417.5 1392 31.7
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 3.1e-113 414.5 1324 32.3
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 4.1e-113 414.1 967 36.9
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 3.2e-110 404.4 1375 31.3
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 4.3e-99 367.5 1367 30.0
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.0e-95 356.3 1369 30.8
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 7.9e-93 346.7 294 64.3
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 3.7e-90 337.8 556 43.3
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.1e-83 316.2 938 31.3
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.1e-81 307.8 1432 28.6
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 5.3e-81 307.4 891 34.2
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 2.3e-76 292.0 1398 29.0
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 5.7e-75 287.3 707 34.8
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.6e-67 261.9 1056 30.1
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 2.0e-64 252.3 775 34.1
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 1.7e-63 249.2 670 34.8
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 8.6e-63 246.9 689 32.9
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.9e-62 245.7 693 31.7
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 1.9e-62 245.7 1482 27.5
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.0e-60 240.0 682 32.4
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.8e-60 239.2 1194 27.6
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.5e-59 236.1 762 30.6
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 2.4e-57 228.8 1127 28.5
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.3e-54 218.0 1212 27.6
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.3e-47 195.7 368 38.9
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.0e-47 195.3 732 30.2
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 3.1e-44 185.3 1004 27.0
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 3.5e-40 171.8 1318 25.0
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 1.0e-39 170.2 1243 26.2
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 1.6e-37 162.9 679 31.1
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 3.6e-37 161.8 1359 26.4
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 1.8e-36 159.5 1118 26.3
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 2.3e-36 159.1 1345 27.0
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.8e-36 157.5 304 39.8
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 4.4e-35 154.8 1480 25.3
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 2.9e-34 152.1 1365 25.9
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.7e-32 145.6 1411 25.4
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 4.3e-30 138.3 1352 24.8
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 1.4e-25 123.2 648 28.2
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 5.4e-25 121.3 1495 22.4
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 2.1e-24 119.4 657 27.5
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 3.5e-24 118.6 530 30.2
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 7.8e-24 117.5 710 28.0
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.3e-23 115.9 1352 23.5
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 3.3e-22 112.1 630 28.4
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.3e-22 111.7 389 32.6
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 1.3e-21 110.2 351 33.9
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 2.1e-21 109.4 381 32.5
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.8e-21 108.2 323 35.0
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 9.9e-19 100.5 1301 25.0
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 9.9e-19 100.5 823 26.2
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.1e-17 97.1 551 26.7
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 3.2e-17 95.5 558 28.7
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 4.2e-17 95.1 601 27.3
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 7.9e-16 90.9 857 27.3
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 5.1e-15 88.2 271 33.2
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 7.4e-14 84.3 1335 23.7
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.3e-13 83.6 432 29.2
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.2e-13 81.3 173 37.6
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 4.0e-12 78.6 595 27.7
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.4e-11 75.5 207 33.8
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 7.6e-11 74.3 762 24.5
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 7.6e-11 74.3 147 36.1
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 7.6e-11 74.3 780 26.2
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 1.7e-10 73.2 140 37.9
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 1.7e-10 73.2 153 34.6
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 2.2e-10 72.8 664 25.9
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 2.9e-10 72.4 1312 24.6
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 4.9e-10 71.6 769 24.2
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 3.2e-09 68.9 1460 24.0
Psat2g047240 Pisum sativum HOM05D000104 ORTHO05D004881 1.2e-08 67.0 140 34.3
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.6e-08 66.6 301 29.6
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 3.5e-08 65.5 46 69.6
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 2.3e-07 62.8 218 32.6
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 3.0e-07 62.4 493 25.4
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 6.7e-07 61.2 43 67.4
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 6.7e-07 61.2 43 67.4
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.6e-06 58.2 184 34.2


User provided reference genes

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