Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 7.1e-68 260.4 124 100.0
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 4.8e-48 194.5 114 85.1
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 3.9e-42 174.9 87 95.4
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 9.7e-41 170.2 87 93.1
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.3e-40 169.9 87 92.0
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 2.2e-40 169.1 89 91.0
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 2.2e-40 169.1 89 91.0
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 2.2e-40 169.1 87 92.0
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.2e-40 169.1 87 92.0
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.2e-40 169.1 87 92.0
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.2e-40 169.1 89 91.0
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 2.2e-40 169.1 89 91.0
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 2.2e-40 169.1 89 91.0
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 2.2e-40 169.1 89 89.9
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.8e-40 168.7 87 90.8
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 2.8e-40 168.7 109 78.0
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.7e-40 168.3 89 89.9
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 3.7e-40 168.3 87 90.8
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 4.8e-40 167.9 89 88.8
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 4.8e-40 167.9 87 90.8
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 6.3e-40 167.5 89 89.9
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 6.3e-40 167.5 87 90.8
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 6.3e-40 167.5 87 90.8
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 6.3e-40 167.5 87 90.8
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 6.3e-40 167.5 89 89.9
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 8.2e-40 167.2 89 88.8
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 1.1e-39 166.8 89 89.9
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 1.1e-39 166.8 87 90.8
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.1e-39 166.8 87 90.8
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.1e-39 166.8 87 90.8
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.1e-39 166.8 87 90.8
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.1e-39 166.8 89 89.9
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.1e-39 166.8 89 88.8
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.4e-39 166.4 89 87.6
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.4e-39 166.4 89 88.8
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.4e-39 166.4 89 88.8
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 1.4e-39 166.4 94 81.9
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 2.4e-39 165.6 87 89.7
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 2.4e-39 165.6 87 89.7
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 2.4e-39 165.6 89 88.8
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 3.1e-39 165.2 87 89.7
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 3.1e-39 165.2 87 89.7
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 3.1e-39 165.2 87 89.7
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.1e-39 165.2 89 87.6
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 3.1e-39 165.2 93 86.0
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 3.1e-39 165.2 89 88.8
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 3.1e-39 165.2 87 89.7
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.1e-39 165.2 89 88.8
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.1e-39 164.9 89 87.6
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 5.3e-39 164.5 89 87.6
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 5.3e-39 164.5 88 87.5
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 5.3e-39 164.5 89 87.6
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 5.3e-39 164.5 89 85.4
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 6.9e-39 164.1 94 84.0
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 6.9e-39 164.1 89 85.4
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 6.9e-39 164.1 89 87.6
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 6.9e-39 164.1 87 88.5
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 6.9e-39 164.1 87 89.7
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 9.1e-39 163.7 87 88.5
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 9.1e-39 163.7 87 88.5
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 9.1e-39 163.7 87 88.5
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 9.1e-39 163.7 89 87.6
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 9.1e-39 163.7 89 87.6
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 1.2e-38 163.3 89 83.1
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 1.2e-38 163.3 89 84.3
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 1.2e-38 163.3 89 87.6
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 1.2e-38 163.3 87 88.5
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.2e-38 163.3 89 87.6
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 1.5e-38 162.9 87 88.5
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 1.5e-38 162.9 87 87.4
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.5e-38 162.9 89 86.5
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 1.5e-38 162.9 103 76.7
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 2.0e-38 162.5 87 88.5
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 2.0e-38 162.5 89 86.5
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 2.0e-38 162.5 88 86.4
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 2.0e-38 162.5 89 87.6
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 2.0e-38 162.5 89 87.6
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 2.6e-38 162.2 89 85.4
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.6e-38 162.2 89 87.6
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 2.6e-38 162.2 89 85.4
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 2.6e-38 162.2 87 87.4
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 3.4e-38 161.8 89 84.3
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.4e-38 161.8 89 85.4
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 3.4e-38 161.8 89 87.6
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 4.5e-38 161.4 89 84.3
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 5.9e-38 161.0 87 86.2
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 5.9e-38 161.0 89 84.3
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 7.7e-38 160.6 89 84.3
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 7.7e-38 160.6 90 84.4
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 1.0e-37 160.2 89 85.4
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.0e-37 160.2 87 87.4
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.0e-37 160.2 87 86.2
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 1.0e-37 160.2 89 86.5
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 1.7e-37 159.5 96 80.2
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 1.7e-37 159.5 96 78.1
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 2.2e-37 159.1 87 86.2
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 2.2e-37 159.1 87 86.2
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 2.2e-37 159.1 87 86.2
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 2.2e-37 159.1 88 85.2
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.9e-37 158.7 93 82.8
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 2.9e-37 158.7 87 86.2
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 2.9e-37 158.7 87 86.2
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 2.9e-37 158.7 87 86.2
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 2.9e-37 158.7 89 83.1
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 3.8e-37 158.3 87 86.2
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 3.8e-37 158.3 87 86.2
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 3.8e-37 158.3 87 86.2
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 3.8e-37 158.3 87 86.2
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 3.8e-37 158.3 87 83.9
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 84.3
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 5.0e-37 157.9 87 85.1
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 5.0e-37 157.9 85 89.4
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 5.0e-37 157.9 89 84.3
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 5.0e-37 157.9 87 86.2
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 6.5e-37 157.5 87 83.9
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 6.5e-37 157.5 87 83.9
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 8.5e-37 157.1 87 85.1
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 8.5e-37 157.1 89 82.0
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 8.5e-37 157.1 87 82.8
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.1e-36 156.8 87 85.1
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 1.1e-36 156.8 87 85.1
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 1.1e-36 156.8 87 85.1
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 1.1e-36 156.8 87 85.1
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.1e-36 156.8 89 80.9
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 1.4e-36 156.4 89 83.1
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.4e-36 156.4 89 82.0
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.4e-36 156.4 87 86.2
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 1.9e-36 156.0 87 85.1
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 2.5e-36 155.6 88 80.7
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 3.2e-36 155.2 87 83.9
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 3.2e-36 155.2 87 82.8
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 4.2e-36 154.8 87 83.9
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 4.2e-36 154.8 87 83.9
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 4.2e-36 154.8 87 83.9
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 4.2e-36 154.8 87 83.9
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 5.5e-36 154.5 87 85.1
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 7.2e-36 154.1 82 87.8
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 1.2e-35 153.3 89 82.0
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 1.2e-35 153.3 95 77.9
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.7e-35 152.1 89 84.3
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 3.6e-35 151.8 96 75.0
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 1.0e-34 150.2 87 79.3
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 1.4e-34 149.8 96 74.0
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 1.4e-34 149.8 101 71.3
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 2.3e-34 149.1 89 78.7
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 3.9e-34 148.3 87 78.2
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 8.8e-34 147.1 87 80.5
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.0e-33 146.0 89 78.7
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 2.6e-33 145.6 87 77.0
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 5.7e-33 144.4 103 70.9
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 3.7e-32 141.7 142 54.9
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 1.3e-29 133.3 114 60.5
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 6.5e-29 131.0 87 65.5
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 7.2e-28 127.5 94 61.7
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 1.4e-26 123.2 87 72.4
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.8e-26 122.9 66 87.9
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 5.2e-26 121.3 64 90.6
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.7e-24 116.3 89 68.5
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 4.8e-24 114.8 64 82.8
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.8e-23 112.8 85 54.1
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.4e-23 112.5 65 81.5
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 3.8e-21 105.1 54 90.7
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 5.0e-21 104.8 55 90.9
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.2e-20 102.1 54 87.0
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 9.4e-20 100.5 54 85.2
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.4e-15 86.7 51 78.4
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 1.8e-10 69.7 56 64.3
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 9.8e-09 63.9 33 87.9
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 1.3e-08 63.5 34 82.4
Solyc08g076560.1 Solanum lycopersicum HOM05D003698 ORTHO05D391923 2.8e-08 62.4 35 82.9
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 3.5e-06 55.5 27 92.6


User provided reference genes

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