Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 2.4e-54 215.3 111 100.0
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.2e-50 203.0 111 92.8
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 6.0e-50 200.7 111 91.9
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 8.7e-49 196.8 111 90.1
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.6e-48 194.1 109 89.0
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 6.2e-47 190.7 106 90.6
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 2.0e-45 185.7 111 85.6
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 2.4e-43 178.7 111 83.8
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 5.4e-43 177.6 111 80.2
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 2.1e-42 175.6 111 81.1
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 2.1e-42 175.6 110 80.0
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 2.7e-42 175.3 111 79.3
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 2.7e-42 175.3 111 82.0
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 1.7e-41 172.6 111 76.6
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 2.3e-41 172.2 111 77.5
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 3.0e-41 171.8 110 78.2
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 3.9e-41 171.4 111 75.7
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 3.9e-41 171.4 111 77.5
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 5.1e-41 171.0 109 78.9
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 5.1e-41 171.0 111 76.6
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 6.6e-41 170.6 111 73.9
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 1.5e-40 169.5 109 77.1
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 1.5e-40 169.5 111 78.4
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 3.3e-40 168.3 111 78.4
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 9.6e-40 166.8 107 76.6
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 1.6e-39 166.0 109 77.1
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 1.6e-39 166.0 106 77.4
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 2.8e-39 165.2 111 73.0
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 2.8e-39 165.2 110 75.5
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 3.6e-39 164.9 111 73.9
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 4.8e-39 164.5 111 72.1
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 6.2e-39 164.1 111 73.9
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 1.1e-38 163.3 111 75.7
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 1.8e-38 162.5 109 70.6
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 4.0e-38 161.4 109 71.6
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 4.0e-38 161.4 110 71.8
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 4.0e-38 161.4 109 72.5
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 4.0e-38 161.4 109 73.4
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 5.3e-38 161.0 109 69.7
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 6.9e-38 160.6 108 75.0
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 6.9e-38 160.6 110 71.8
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.2e-37 159.8 109 75.2
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 2.0e-37 159.1 111 69.4
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 3.4e-37 158.3 110 72.7
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 4.5e-37 157.9 109 70.6
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 2.2e-36 155.6 109 70.6
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 2.2e-36 155.6 110 70.9
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 4.9e-36 154.5 110 70.9
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 4.9e-36 154.5 109 68.8
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 6.4e-36 154.1 104 73.1
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 8.4e-36 153.7 111 68.5
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 1.1e-35 153.3 109 70.6
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 1.1e-35 153.3 99 73.7
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 1.1e-35 153.3 113 69.9
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 1.1e-35 153.3 111 67.6
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 1.1e-35 153.3 136 64.0
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 1.4e-35 152.9 109 66.1
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 1.4e-35 152.9 111 67.6
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.9e-35 152.5 108 74.1
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 3.2e-35 151.8 106 71.7
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 4.2e-35 151.4 112 67.9
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 1.2e-34 149.8 109 67.9
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.6e-34 149.4 128 61.7
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 1.6e-34 149.4 111 65.8
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 2.1e-34 149.1 109 67.9
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 2.7e-34 148.7 106 66.0
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 3.5e-34 148.3 111 67.6
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 4.6e-34 147.9 108 68.5
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 6.0e-34 147.5 96 72.9
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 7.9e-34 147.1 111 63.1
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 1.3e-33 146.4 114 68.4
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 1.3e-33 146.4 102 72.5
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 1.1e-32 143.3 111 68.5
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 1.5e-32 142.9 102 71.6
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 2.5e-32 142.1 111 68.5
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 2.5e-32 142.1 104 66.3
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 7.4e-32 140.6 111 66.7
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 9.6e-32 140.2 110 65.5
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 3.7e-31 138.3 107 64.5
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 3.7e-31 138.3 107 64.5
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 3.7e-31 138.3 102 68.6
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 6.2e-31 137.5 105 68.6
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 1.4e-30 136.3 111 64.9
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 1.4e-30 136.3 104 62.5
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.8e-30 136.0 112 64.3
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.8e-30 136.0 101 68.3
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 5.3e-30 134.4 102 66.7
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 6.9e-30 134.0 105 66.7
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 6.9e-30 134.0 102 66.7
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 9.0e-30 133.7 111 64.0
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 9.0e-30 133.7 101 67.3
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 1.2e-29 133.3 102 66.7
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 2.0e-29 132.5 110 65.5
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 2.0e-29 132.5 110 65.5
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 2.0e-29 132.5 105 65.7
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 2.6e-29 132.1 110 64.5
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 2.6e-29 132.1 102 65.7
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 3.4e-29 131.7 101 67.3
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 3.4e-29 131.7 105 65.7
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 3.4e-29 131.7 105 65.7
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 3.4e-29 131.7 105 65.7
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 4.5e-29 131.3 103 68.9
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 7.6e-29 130.6 99 67.7
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 7.6e-29 130.6 98 68.4
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 7.6e-29 130.6 98 68.4
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 9.9e-29 130.2 109 63.3
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 9.9e-29 130.2 109 62.4
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 1.7e-28 129.4 99 65.7
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.2e-28 129.0 98 67.3
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.2e-28 129.0 98 67.3
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 2.9e-28 128.6 101 66.3
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 3.8e-28 128.3 103 65.0
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 3.2e-27 125.2 100 62.0
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 3.2e-27 125.2 104 55.8
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 4.6e-26 121.3 100 63.0
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 1.8e-25 119.4 103 60.2
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 1.1e-24 116.7 99 64.6
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 5.6e-24 114.4 111 57.7
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 3.7e-23 111.7 103 56.3
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 8.2e-23 110.5 86 67.4
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 1.1e-22 110.2 101 57.4
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 7.6e-21 104.0 84 63.1
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 8.4e-20 100.5 104 51.9
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 2.5e-19 99.0 58 84.5
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 3.2e-19 98.6 74 60.8
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 9.3e-19 97.1 95 52.6
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 3.5e-18 95.1 99 47.5
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 3.9e-17 91.7 117 53.8
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 1.3e-15 86.7 73 57.5
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 4.8e-15 84.7 102 43.1
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 2.0e-13 79.3 72 52.8
ClCG08G001190 Citrullus lanatus HOM05D005755 ORTHO05D007006 3.2e-11 72.0 60 60.0
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 5.5e-11 71.2 73 53.4
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 6.1e-10 67.8 65 52.3
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 3.9e-09 65.1 67 55.2
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 5.7e-08 61.2 65 46.2
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 4.8e-07 58.2 96 36.5


User provided reference genes

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