Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.5e-186 656.0 327 100.0
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 3.9e-174 614.8 328 93.6
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.9e-174 614.8 328 93.6
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.7e-172 608.2 328 92.7
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 4.5e-162 574.7 327 85.9
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 7.2e-160 567.4 327 84.7
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 2.6e-157 558.9 327 83.5
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 5.7e-141 504.6 327 76.1
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.1e-139 500.4 326 74.2
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.4e-139 499.2 323 80.8
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.2e-138 496.9 327 74.6
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.2e-138 496.9 328 75.3
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.5e-138 495.4 326 73.6
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 4.5e-138 495.0 326 73.9
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 3.8e-137 491.9 329 74.8
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 3.8e-137 491.9 323 73.1
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 3.6e-135 485.3 327 71.9
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 8.0e-135 484.2 323 78.9
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 2.3e-134 482.6 334 71.6
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 5.2e-134 481.5 330 72.1
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 5.7e-133 478.0 327 70.6
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.2e-132 476.1 328 69.5
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.2e-132 476.1 324 71.0
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.8e-132 475.7 324 71.0
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 8.3e-132 474.2 323 70.3
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.1e-131 473.8 324 71.3
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.1e-131 473.8 324 71.0
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-131 473.8 323 68.7
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.8e-131 473.0 326 71.2
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.8e-131 473.0 324 70.7
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.8e-131 473.0 326 70.2
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.4e-131 472.6 328 70.1
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 3.1e-131 472.2 320 71.9
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.1e-131 471.9 328 69.8
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 5.4e-131 471.5 329 70.2
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.4e-131 471.5 323 68.7
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 9.1e-131 470.7 327 68.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 9.1e-131 470.7 327 69.4
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.7e-130 469.2 330 70.3
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.7e-130 469.2 327 68.5
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 3.5e-130 468.8 324 68.5
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.5e-130 468.8 328 71.0
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 4.5e-130 468.4 325 68.9
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 4.5e-130 468.4 331 69.2
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 5.9e-130 468.0 323 68.1
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.3e-129 466.8 324 68.2
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 3.8e-129 465.3 324 70.7
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 6.6e-129 464.5 321 71.0
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 6.6e-129 464.5 329 69.6
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.5e-128 462.6 331 67.4
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 7.2e-128 461.1 323 67.8
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 7.2e-128 461.1 324 69.4
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 7.2e-128 461.1 331 67.4
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 9.5e-128 460.7 331 68.9
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.2e-127 460.3 329 68.4
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.6e-127 459.9 322 70.2
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.1e-127 459.5 324 68.2
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 3.6e-127 458.8 327 67.3
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 3.6e-127 458.8 329 69.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.0e-126 455.7 332 68.4
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.2e-125 453.8 327 66.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.0e-125 453.0 325 68.0
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 4.4e-125 451.8 329 67.5
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 5.7e-125 451.4 329 67.2
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.8e-124 449.1 318 69.2
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.8e-124 449.1 321 67.0
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.4e-123 446.0 320 66.2
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.2e-123 445.7 328 68.6
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 5.4e-123 444.9 320 65.0
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 9.2e-123 444.1 325 67.1
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 4.5e-122 441.8 309 67.0
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 5.9e-122 441.4 324 66.7
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.0e-121 440.7 323 65.6
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.3e-121 439.5 323 65.3
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 5.0e-121 438.3 323 65.6
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 5.0e-121 438.3 329 67.8
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 8.6e-121 437.6 327 66.4
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.5e-120 436.8 327 65.7
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.5e-120 436.8 371 60.4
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.3e-120 435.6 323 65.0
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 3.3e-120 435.6 324 64.5
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 4.3e-120 435.3 333 65.2
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 5.6e-120 434.9 327 65.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 2.1e-119 433.0 327 64.8
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 3.6e-119 432.2 327 63.9
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.8e-118 429.9 327 63.9
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.8e-118 429.9 326 64.4
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 6.8e-118 427.9 325 63.7
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.8e-118 427.9 323 63.5
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 6.8e-118 427.9 327 66.1
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.2e-117 427.2 326 64.4
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 2.0e-117 426.4 325 63.4
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 2.6e-117 426.0 327 64.2
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 7.5e-117 424.5 325 63.4
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 9.8e-117 424.1 327 64.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.7e-116 423.3 305 66.2
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 5.4e-115 418.3 264 77.7
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 9.2e-115 417.5 281 73.7
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.5e-114 415.6 304 64.8
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 4.6e-114 415.2 326 62.6
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 4.6e-114 415.2 326 62.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 6.6e-113 411.4 327 62.7
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 8.6e-113 411.0 326 62.3
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 2.5e-112 409.5 320 63.1
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 7.3e-112 407.9 322 64.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 6.2e-111 404.8 332 61.4
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.7e-108 395.6 290 66.2
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.1e-107 394.0 294 65.0
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 5.4e-107 391.7 418 53.3
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 9.2e-107 391.0 325 59.7
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 9.5e-104 380.9 326 58.0
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.2e-103 380.6 256 73.0
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.6e-103 379.0 378 54.5
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 2.3e-102 376.3 328 58.2
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 8.3e-100 367.9 547 41.0
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 9.2e-99 364.4 289 61.2
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.6e-95 352.4 327 56.9
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.5e-93 347.1 323 55.1
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.3e-89 334.0 685 34.0
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 2.5e-88 329.7 263 58.9
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 4.3e-88 328.9 272 59.9
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 4.4e-85 318.9 220 68.2
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.4e-83 313.9 308 51.9
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 2.4e-83 313.2 230 67.4
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 5.1e-81 305.4 313 48.9
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 8.7e-81 304.7 316 48.7
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.5e-77 293.9 258 58.1
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.4e-76 288.5 204 69.1
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 3.5e-74 282.7 308 46.4
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 2.5e-67 260.0 223 57.0
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.8e-65 253.8 177 71.2
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.3e-52 211.1 305 37.4
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.5e-45 187.6 196 46.4
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 4.5e-45 186.0 96 97.9
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 7.4e-40 168.7 96 91.7
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.2e-34 151.4 96 76.0
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 4.2e-27 126.3 123 55.3
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 7.2e-27 125.6 75 73.3
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 7.2e-27 125.6 84 70.2
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.4e-27 125.2 93 62.4
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.7e-26 123.6 93 62.4
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.5e-24 117.9 326 28.2
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.0e-20 105.1 71 70.4
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.6e-18 97.8 80 55.0
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.5e-16 91.3 69 66.7
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 1.6e-13 81.3 62 64.5
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.1e-10 70.9 56 60.7
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 4.7e-10 69.7 54 66.7
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 4.7e-10 69.7 54 66.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 6.1e-10 69.3 54 66.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 1.8e-09 67.8 53 64.2
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 1.3e-07 61.6 30 93.3
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.3e-07 61.6 30 93.3
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.7e-07 61.2 43 65.1


User provided reference genes

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