Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.6e-109 398.7 191 100.0
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 7.8e-98 360.5 180 93.3
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.8e-98 360.5 180 93.3
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.5e-96 353.6 180 92.8
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.8e-95 352.1 180 91.7
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.1e-86 323.6 189 82.5
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 4.4e-85 318.2 188 79.3
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 7.3e-80 300.8 186 74.7
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 9.6e-80 300.4 187 72.7
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.6e-79 299.7 194 73.2
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 3.6e-79 298.5 182 75.8
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 4.7e-79 298.1 186 73.7
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 8.1e-79 297.4 185 75.7
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.1e-78 297.0 182 73.6
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.1e-78 297.0 186 73.7
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.1e-78 297.0 182 74.7
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 1.1e-78 297.0 182 75.3
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.4e-78 296.6 185 75.1
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 5.2e-78 294.7 173 78.0
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 6.9e-78 294.3 187 71.7
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 3.4e-77 292.0 187 72.7
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 4.4e-77 291.6 195 73.3
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 5.8e-77 291.2 191 70.2
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 4.9e-76 288.1 190 70.5
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 4.9e-76 288.1 188 71.3
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 8.4e-76 287.3 187 72.7
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.9e-75 286.2 187 71.7
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.9e-75 286.2 192 70.8
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.4e-75 285.8 188 71.8
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.4e-75 285.8 182 71.4
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 3.2e-75 285.4 182 72.0
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 3.2e-75 285.4 185 74.1
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 7.1e-75 284.3 187 70.1
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 9.3e-75 283.9 187 73.3
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 9.3e-75 283.9 186 70.4
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.2e-74 283.5 183 71.0
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.6e-74 283.1 182 72.5
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.1e-74 282.7 179 72.1
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 6.0e-74 281.2 185 72.4
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 7.8e-74 280.8 193 68.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 7.8e-74 280.8 196 67.9
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.0e-73 280.4 193 68.9
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 2.3e-73 279.3 182 70.9
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.3e-73 279.3 181 71.8
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 5.1e-73 278.1 182 71.4
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 5.1e-73 278.1 181 73.5
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 6.6e-73 277.7 182 70.9
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 6.6e-73 277.7 187 68.4
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.1e-72 276.9 187 67.4
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.9e-72 276.2 184 70.1
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 3.3e-72 275.4 198 68.2
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 3.3e-72 275.4 167 76.0
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 3.3e-72 275.4 177 72.3
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 3.3e-72 275.4 182 71.4
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.3e-71 273.5 179 70.9
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 4.8e-71 271.6 194 68.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 6.2e-71 271.2 195 67.2
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.1e-70 270.4 178 71.3
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.1e-70 270.4 179 69.3
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.4e-70 270.0 175 72.0
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.4e-70 270.0 158 77.8
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.8e-70 269.6 195 68.7
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.4e-70 269.2 261 55.2
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 3.1e-70 268.9 188 64.4
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 5.3e-70 268.1 186 69.4
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.0e-69 266.2 171 71.9
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 2.6e-69 265.8 193 65.3
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 5.8e-69 264.6 202 63.4
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 1.3e-68 263.5 182 68.1
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.3e-68 263.5 184 68.5
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.9e-68 262.3 191 64.4
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 6.4e-68 261.2 179 68.2
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 6.4e-68 261.2 193 65.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 1.1e-67 260.4 192 63.5
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.1e-67 260.4 175 69.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.9e-67 259.6 171 69.6
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.9e-67 259.6 195 66.2
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.2e-67 258.5 176 65.9
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 4.2e-67 258.5 180 67.8
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 4.2e-67 258.5 180 67.8
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 7.1e-67 257.7 177 66.7
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 7.1e-67 257.7 200 62.0
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.2e-66 256.9 192 64.1
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.6e-66 256.5 186 64.5
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.1e-66 256.1 178 67.4
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 2.1e-66 256.1 192 63.5
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 2.1e-66 256.1 192 63.5
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 7.9e-66 254.2 202 62.9
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 5.1e-65 251.5 163 73.0
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 6.7e-65 251.1 177 66.7
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 6.7e-65 251.1 183 61.7
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 5.6e-64 248.1 188 64.4
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.3e-62 241.5 174 64.4
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.2e-61 240.4 182 63.2
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 5.8e-61 238.0 186 60.8
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.3e-60 236.9 167 65.3
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.1e-59 233.8 181 59.1
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.2e-59 231.9 166 67.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 7.1e-59 231.1 183 59.0
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 9.3e-59 230.7 159 67.9
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 2.7e-58 229.2 197 55.3
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.7e-58 229.2 179 60.3
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.7e-58 229.2 151 69.5
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 4.6e-58 228.4 186 59.7
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.8e-57 226.5 181 59.1
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 3.0e-57 225.7 181 58.0
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.1e-56 223.8 140 75.0
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.3e-56 221.9 182 59.3
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 2.8e-55 219.2 161 64.0
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 8.1e-55 217.6 190 55.8
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.0e-52 210.7 132 74.2
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 6.5e-52 208.0 164 62.8
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.0e-49 200.7 135 69.6
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-48 197.2 135 65.9
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.9e-48 196.4 196 49.5
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.8e-47 191.8 166 54.8
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.3e-47 191.4 164 55.5
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.5e-45 186.8 166 54.2
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-44 182.6 160 55.0
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.5e-44 181.0 161 53.4
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.4e-43 180.3 114 71.9
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.9e-43 179.9 89 94.4
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.3e-41 173.7 144 59.0
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.6e-39 166.8 134 57.5
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 8.2e-39 164.5 187 48.7
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.4e-38 162.9 180 46.7
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 5.3e-38 161.8 180 46.7
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 6.9e-38 161.4 180 47.2
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 9.1e-38 161.0 110 70.0
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.8e-36 155.6 123 60.2
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-34 149.4 164 46.3
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.0e-33 147.5 101 66.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 1.3e-28 130.6 187 39.6
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-20 102.8 108 43.5
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.5e-16 90.5 116 41.4
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 2.6e-16 89.7 54 77.8
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.9e-12 76.3 49 67.3
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 2.5e-11 73.2 104 38.5
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 5.5e-11 72.0 55 61.8
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 2.1e-10 70.1 48 62.5
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 2.1e-10 70.1 58 58.6
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.0e-09 65.9 53 54.7


User provided reference genes

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