Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 5.3e-241 837.4 468 100.0
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 2.8e-205 718.8 464 86.6
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 6.1e-205 717.6 464 86.2
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.6e-200 701.4 464 85.1
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 9.5e-190 667.2 464 81.9
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.6e-181 638.6 464 78.7
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.7e-178 629.8 467 78.6
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 2.7e-168 595.9 467 75.2
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 1.9e-166 589.7 466 74.5
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 1.3e-154 550.4 465 69.2
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 5.1e-151 538.5 468 70.3
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 6.7e-151 538.1 487 66.5
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.2e-147 527.3 466 68.0
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 3.2e-145 519.2 461 67.0
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 3.5e-144 515.8 466 67.2
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.3e-141 507.3 465 67.7
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.2e-141 506.5 465 67.7
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.1e-140 504.2 489 64.2
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.4e-140 503.8 463 65.2
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.4e-139 499.2 467 67.2
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 5.0e-138 495.4 470 64.3
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.5e-134 483.8 464 63.4
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 1.3e-133 480.7 465 62.6
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.7e-133 480.3 462 63.0
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.8e-133 479.6 470 62.6
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 6.9e-132 474.9 464 62.7
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.7e-130 470.3 457 63.2
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 2.2e-130 469.9 463 60.7
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 2.9e-130 469.5 470 61.9
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.9e-130 469.5 482 61.8
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 6.5e-130 468.4 467 64.5
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.8e-127 460.3 466 63.3
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.8e-127 460.3 473 62.2
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.5e-126 457.2 469 59.9
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.0e-126 456.8 464 63.8
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 7.4e-126 454.9 469 61.4
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 3.7e-125 452.6 464 59.5
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 1.5e-123 447.2 467 59.5
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 5.9e-123 445.3 465 59.4
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 5.9e-123 445.3 473 59.4
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 1.3e-122 444.1 463 59.6
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 8.5e-122 441.4 433 63.0
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 5.5e-121 438.7 480 58.5
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 6.7e-119 431.8 466 59.9
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 1.5e-118 430.6 503 54.5
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.3e-117 427.6 457 59.3
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 8.2e-117 424.9 463 60.0
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.8e-116 423.7 465 58.7
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 4.1e-116 422.5 470 58.5
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 9.1e-116 421.4 658 47.6
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.2e-115 421.0 466 59.0
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.6e-115 420.6 481 57.6
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 4.2e-113 412.5 363 68.0
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 5.5e-113 412.1 458 58.5
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.2e-112 411.0 468 56.8
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.6e-112 410.6 466 57.5
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 8.0e-112 408.3 463 57.0
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 8.0e-112 408.3 463 57.0
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.4e-111 407.5 462 56.9
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 3.0e-111 406.4 461 56.6
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 3.0e-111 406.4 321 72.9
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 5.2e-111 405.6 319 73.4
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 1.5e-110 404.1 465 56.8
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 2.6e-110 403.3 466 56.7
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 3.4e-110 402.9 466 56.7
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 7.5e-110 401.7 464 55.4
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 3.7e-109 399.4 467 55.2
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 6.3e-109 398.7 468 56.2
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.5e-107 392.9 475 56.6
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.0e-106 391.3 463 55.5
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.7e-106 390.6 465 54.6
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.9e-105 387.1 471 53.9
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 4.2e-105 386.0 462 53.9
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 5.5e-105 385.6 461 54.0
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.6e-104 384.0 525 49.3
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.0e-103 381.3 382 62.0
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 1.4e-103 380.9 462 53.5
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.3e-101 374.4 459 54.2
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.3e-101 374.4 464 52.6
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.3e-101 374.4 469 53.9
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.2e-101 373.6 473 51.8
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 4.9e-101 372.5 275 74.9
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 5.9e-99 365.5 463 50.8
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.1e-97 361.3 459 54.7
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 2.1e-96 357.1 464 54.7
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 1.8e-95 354.0 463 53.6
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 8.9e-95 351.7 529 48.4
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 1.2e-94 351.3 462 53.7
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.5e-94 350.9 468 49.1
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 4.4e-94 349.4 466 50.4
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 8.3e-93 345.1 459 50.3
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 5.4e-92 342.4 470 49.8
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 3.3e-89 333.2 463 50.8
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 5.0e-82 309.3 466 49.4
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.5e-81 307.0 467 49.3
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 3.6e-80 303.1 463 50.1
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.7e-80 302.8 456 47.4
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.8e-79 300.8 466 47.6
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 4.9e-77 292.7 297 63.6
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 3.2e-76 290.0 453 44.8
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 2.3e-74 283.9 256 66.8
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.6e-72 277.7 372 50.5
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 5.2e-71 272.7 474 46.2
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.3e-69 268.1 348 51.7
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 8.4e-69 265.4 228 71.1
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.7e-58 231.1 247 53.4
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.8e-56 223.8 302 53.0
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 9.9e-54 215.3 490 40.8
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.2e-53 214.2 494 39.7
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.4e-47 194.9 326 42.6
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 8.7e-42 175.6 468 34.8
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 4.9e-37 159.8 171 63.7
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.1e-33 148.7 352 35.5
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 5.3e-31 139.8 275 43.3
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 1.6e-24 118.2 88 73.9
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 2.4e-23 114.4 212 46.2
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 2.4e-23 114.4 385 32.5
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 4.1e-23 113.6 196 44.9
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 9.0e-23 112.5 196 44.4
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 7.7e-22 109.4 94 63.8
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 7.7e-22 109.4 94 63.8
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 7.2e-20 102.8 161 49.1
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 3.6e-19 100.5 155 51.0
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 5.7e-17 93.2 153 39.9
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 6.9e-15 86.3 88 56.8
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 1.5e-14 85.1 196 37.8
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.3e-13 82.0 252 32.1
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 7.2e-12 76.3 51 74.5
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 2.7e-11 74.3 248 30.2
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.8e-07 61.6 119 43.7


User provided reference genes

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