Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 2.1e-88 328.9 161 100.0
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 3.6e-80 301.6 153 96.7
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 3.2e-76 288.5 150 95.3
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 5.4e-76 287.7 156 93.6
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 9.2e-68 260.4 151 85.4
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 9.2e-68 260.4 151 85.4
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 9.2e-68 260.4 151 85.4
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 9.2e-68 260.4 151 85.4
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.2e-67 260.0 151 85.4
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 7.8e-67 257.3 137 92.0
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 3.6e-64 248.4 149 81.2
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 9.0e-63 243.8 126 94.4
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 7.6e-62 240.7 147 80.3
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 1.3e-58 229.9 126 90.5
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 3.0e-58 228.8 142 78.2
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 2.2e-53 212.6 139 75.5
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 2.2e-53 212.6 136 75.7
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 3.8e-53 211.8 146 71.2
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 2.4e-52 209.1 147 66.7
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 4.2e-52 208.4 142 70.4
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 4.2e-52 208.4 147 66.0
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 4.2e-52 208.4 146 70.5
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 4.2e-52 208.4 138 72.5
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 5.4e-52 208.0 147 66.7
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 7.1e-52 207.6 146 69.9
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 3.5e-51 205.3 138 71.0
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 3.5e-51 205.3 142 69.7
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 4.6e-51 204.9 142 69.0
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 2.3e-50 202.6 138 70.3
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 2.3e-50 202.6 137 68.6
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 3.0e-50 202.2 142 68.3
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 2.5e-49 199.1 148 63.5
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 3.3e-49 198.7 145 65.5
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 3.3e-49 198.7 145 65.5
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 3.3e-49 198.7 145 65.5
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 9.6e-49 197.2 144 64.6
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 2.1e-48 196.1 136 67.6
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 6.2e-48 194.5 144 63.2
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 1.1e-47 193.7 140 65.0
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 3.1e-47 192.2 136 64.0
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 3.1e-47 192.2 127 78.7
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 4.0e-47 191.8 134 67.9
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 6.9e-47 191.0 139 68.3
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 1.5e-46 189.9 143 63.6
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 4.5e-46 188.3 138 68.8
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 7.6e-46 187.6 139 66.9
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 7.6e-46 187.6 139 66.9
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 1.7e-45 186.4 134 61.9
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 3.8e-45 185.3 140 64.3
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 4.9e-45 184.9 140 64.3
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 1.4e-44 183.3 151 62.3
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 1.9e-44 183.0 151 60.3
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 5.5e-44 181.4 136 64.0
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 7.1e-44 181.0 142 65.5
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 7.1e-44 181.0 134 67.9
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 9.3e-44 180.6 148 62.2
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 2.1e-43 179.5 137 65.0
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 2.1e-43 179.5 136 64.7
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 2.1e-43 179.5 139 62.6
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 4.6e-43 178.3 139 61.9
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 7.9e-43 177.6 139 61.9
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 1.0e-42 177.2 144 60.4
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 1.8e-42 176.4 142 63.4
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 3.9e-42 175.3 150 60.7
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 5.1e-42 174.9 150 60.0
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 6.7e-42 174.5 141 60.3
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 2.5e-41 172.6 135 64.4
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 3.3e-41 172.2 151 59.6
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 4.3e-41 171.8 147 57.8
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 7.4e-41 171.0 137 60.6
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 9.6e-41 170.6 136 61.8
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 9.6e-41 170.6 137 60.6
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.3e-40 170.2 141 58.9
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.3e-40 170.2 137 60.6
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 2.8e-40 169.1 148 56.1
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 4.8e-40 168.3 137 61.3
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 4.8e-40 168.3 151 58.9
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 4.8e-40 168.3 151 58.9
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 8.2e-40 167.5 149 54.4
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 8.2e-40 167.5 149 54.4
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.1e-39 167.2 143 59.4
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 1.8e-39 166.4 147 54.4
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 3.1e-39 165.6 141 57.4
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 3.1e-39 165.6 141 57.4
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 3.1e-39 165.6 134 59.0
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 4.0e-39 165.2 141 57.4
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 4.0e-39 165.2 134 61.9
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 5.3e-39 164.9 141 57.4
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 5.3e-39 164.9 142 58.5
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 6.9e-39 164.5 141 57.4
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 9.0e-39 164.1 141 56.7
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 1.2e-38 163.7 141 56.7
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 1.2e-38 163.7 142 57.7
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 1.2e-38 163.7 142 57.7
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 1.2e-38 163.7 142 57.7
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 1.2e-38 163.7 141 56.7
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 2.0e-38 162.9 142 57.7
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 3.4e-38 162.2 139 58.3
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 7.6e-38 161.0 141 55.3
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 1.0e-37 160.6 143 53.1
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.6e-35 153.3 136 57.4
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 3.0e-34 149.1 122 62.3
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 4.1e-31 138.7 107 64.5
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 7.6e-30 134.4 98 61.2
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 9.3e-28 127.5 134 50.7
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 9.3e-28 127.5 134 50.7
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 1.1e-25 120.6 98 62.2
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 2.5e-25 119.4 107 57.0
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 2.2e-24 116.3 103 59.2
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.8e-23 113.2 137 46.7
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 7.7e-22 107.8 88 61.4
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 1.7e-21 106.7 118 55.9
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 2.1e-19 99.8 137 40.9
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 1.8e-18 96.7 130 45.4
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 1.8e-18 96.7 130 45.4
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 1.8e-18 96.7 130 45.4
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 1.8e-18 96.7 130 45.4
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 1.8e-18 96.7 130 45.4
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 6.9e-15 84.7 161 36.0
FAN23G0919 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.1e-12 77.4 50 76.0
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 1.5e-09 67.0 55 54.5
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 1.5e-09 67.0 51 58.8
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 2.6e-09 66.2 52 57.7
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 3.3e-09 65.9 51 56.9
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 3.3e-09 65.9 51 56.9
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 5.7e-09 65.1 51 56.9
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 7.0e-07 58.2 40 62.5
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 9.1e-07 57.8 40 62.5
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 2.0e-06 56.6 71 43.7
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 7.7e-06 54.7 39 53.8


User provided reference genes

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