Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0363231 Rosa chinensis HOM05D006941 ORTHO05D008361 1.6e-21 105.1 51 100.0
RcHm_v2.0_Chr4g0420661 Rosa chinensis HOM05D006941 ORTHO05D008361 7.3e-19 96.3 50 92.0
FvH4_4g16990 Fragaria vesca HOM05D006941 ORTHO05D008361 2.8e-18 94.4 50 90.0
FAN07G2315 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.8e-18 94.4 50 90.0
FAN12G1403 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.8e-18 94.4 50 90.0
FAN12G3786 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.8e-18 94.4 50 90.0
FAN22G2172 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.8e-18 94.4 50 90.0
EL10As5g23584 Beta vulgaris HOM05D006941 ORTHO05D008361 8.1e-18 92.8 50 88.0
FAN17G2868 Fragaria x ananassa HOM05D006941 ORTHO05D008361 8.1e-18 92.8 50 88.0
Prupe.1G143700 Prunus persica HOM05D006941 ORTHO05D008361 8.1e-18 92.8 50 88.0
Atru.chr4.2738 Acer truncatum HOM05D006941 ORTHO05D008361 6.8e-17 89.7 50 84.0
Gorai.005G056700 Gossypium raimondii HOM05D006941 ORTHO05D008361 8.9e-17 89.4 50 84.0
CANSAT78G0092 Cannabis sativa HOM05D006941 ORTHO05D008361 1.2e-16 89.0 50 82.0
Ca_09608_v3 Cicer arietinum L. HOM05D006941 ORTHO05D008361 1.2e-16 89.0 50 82.0
Manes.03G190000 Manihot esculenta HOM05D006941 ORTHO05D008361 1.5e-16 88.6 50 84.0
TWI09G0325 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 2.0e-16 88.2 50 82.0
Gohir.A02G045400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 2.6e-16 87.8 50 82.0
Gohir.D02G051400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 2.6e-16 87.8 50 82.0
Psat6g067840 Pisum sativum HOM05D006941 ORTHO05D008361 2.6e-16 87.8 50 80.0
Oeu010965.1 Olea europaea HOM05D006941 ORTHO05D008361 4.4e-16 87.0 50 84.0
Oeu029280.1 Olea europaea HOM05D006941 ORTHO05D008361 4.4e-16 87.0 50 84.0
Lalb_Chr22g0358511 Lupinus albus HOM05D006941 ORTHO05D008361 5.8e-16 86.7 50 82.0
Duzib151G0434 Durio zibethinus HOM05D006941 ORTHO05D008361 7.6e-16 86.3 50 82.0
Thecc.04G275300 Theobroma cacao HOM05D006941 ORTHO05D008361 7.6e-16 86.3 50 82.0
TWI53G0190 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 7.6e-16 86.3 49 81.6
Lalb_Chr14g0364951 Lupinus albus HOM05D006941 ORTHO05D008361 9.9e-16 85.9 50 82.0
Phvul.007G158300 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 9.9e-16 85.9 50 82.0
Lj5g0014316 Lotus japonicus HOM05D006941 ORTHO05D008361 1.3e-15 85.5 50 82.0
CiPaw.02G087700 Carya illinoinensis HOM05D006941 ORTHO05D008361 1.7e-15 85.1 50 80.0
CARHR172790 Cardamine hirsuta HOM05D006941 ORTHO05D008361 2.2e-15 84.7 50 74.0
Glyma.10G044600 Glycine max HOM05D006941 ORTHO05D008361 2.2e-15 84.7 50 80.0
Glyma.13G132200 Glycine max HOM05D006941 ORTHO05D008361 2.2e-15 84.7 50 80.0
HanXRQChr05g0154771 Helianthus annuus HOM05D006941 ORTHO05D008361 2.2e-15 84.7 50 80.0
Nitab4.5_0001624g0050 Nicotiana tabacum HOM05D006941 ORTHO05D008361 2.9e-15 84.3 50 80.0
Phvul.010G109000 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 2.9e-15 84.3 50 80.0
Phvul.L002281 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 2.9e-15 84.3 50 80.0
Solyc01g067820.3 Solanum lycopersicum HOM05D006941 ORTHO05D008361 2.9e-15 84.3 50 80.0
PGSC0003DMG400022846 Solanum tuberosum HOM05D006941 ORTHO05D008361 2.9e-15 84.3 50 80.0
Manes.14G117300 Manihot esculenta HOM05D006941 ORTHO05D008361 3.8e-15 84.0 50 80.0
PGR004G2827 Punica granatum HOM05D006941 ORTHO05D008361 3.8e-15 84.0 50 80.0
Actinidia32379 Actinidia chinensis HOM05D006941 ORTHO05D008361 4.9e-15 83.6 50 80.0
Thhalv10006352m.g Eutrema salsugineum HOM05D006941 ORTHO05D008361 4.9e-15 83.6 49 79.6
Sp5g00970 Schrenkiella parvula HOM05D006941 ORTHO05D008361 4.9e-15 83.6 49 79.6
Sopen01g029770 Solanum pennellii HOM05D006941 ORTHO05D008361 4.9e-15 83.6 50 78.0
Migut.G00223 Erythranthe guttata HOM05D006941 ORTHO05D008361 6.4e-15 83.2 50 80.0
Aa31LG10G16360 Aethionema arabicum HOM05D006941 ORTHO05D008361 8.4e-15 82.8 50 76.0
Carub.0005s2918 Capsella rubella HOM05D006941 ORTHO05D008361 8.4e-15 82.8 49 75.5
Potri.005G071700 Populus trichocarpa HOM05D006941 ORTHO05D008361 8.4e-15 82.8 50 78.0
BcaC07g42761 Brassica carinata HOM05D006941 ORTHO05D008361 1.1e-14 82.4 49 77.6
C08p37290 Brassica napus HOM05D006941 ORTHO05D008361 1.1e-14 82.4 49 77.6
BolC8t51307H Brassica oleracea HOM05D006941 ORTHO05D008361 1.1e-14 82.4 49 77.6
ECA233G1626 Erigeron canadensis HOM05D006941 ORTHO05D008361 1.1e-14 82.4 50 80.0
SalBow1G8344 Salvia bowleyana HOM05D006941 ORTHO05D008361 1.1e-14 82.4 50 76.0
Sed0004518 Sechium edule HOM05D006941 ORTHO05D008361 1.1e-14 82.4 50 78.0
Medtr1g068580 Medicago truncatula HOM05D006941 ORTHO05D008361 1.4e-14 82.0 49 79.6
CSS0029112 Camellia sinensis var. sinensis HOM05D006941 ORTHO05D008361 1.9e-14 81.6 50 76.0
Eucgr.H03682 Eucalyptus grandis HOM05D006941 ORTHO05D008361 3.2e-14 80.9 50 78.0
Peaxi162Scf01067g00024 Petunia axillaris HOM05D006941 ORTHO05D008361 4.2e-14 80.5 50 76.0
Os11g0107450 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 5.4e-14 80.1 50 76.0
QL06p006942 Quercus lobata HOM05D006941 ORTHO05D008361 7.1e-14 79.7 50 74.0
THA.LOC104820449 Tarenaya hassleriana HOM05D006941 ORTHO05D008361 7.1e-14 79.7 49 73.5
CAN.G1327.4 Capsicum annuum HOM05D006941 ORTHO05D008361 9.2e-14 79.3 50 76.0
Eucgr.H03704 Eucalyptus grandis HOM05D006941 ORTHO05D008361 9.2e-14 79.3 50 76.0
AL5G45260 Arabidopsis lyrata HOM05D006941 ORTHO05D008361 1.2e-13 79.0 49 73.5
AT3G62450 Arabidopsis thaliana HOM05D006941 ORTHO05D008361 1.2e-13 79.0 49 73.5
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 1.2e-13 79.0 50 72.0
A09p54410 Brassica napus HOM05D006941 ORTHO05D008361 1.6e-13 78.6 49 71.4
BraA09t40854Z Brassica rapa HOM05D006941 ORTHO05D008361 1.6e-13 78.6 49 71.4
Medtr2g005070 Medicago truncatula HOM05D006941 ORTHO05D008361 2.1e-13 78.2 48 77.1
BcaB02g07336 Brassica carinata HOM05D006941 ORTHO05D008361 2.7e-13 77.8 48 75.0
Rhsim02G0014500 Rhododendron simsii HOM05D006941 ORTHO05D008361 2.7e-13 77.8 50 76.0
Sabra07G0080600 Salix brachista HOM05D006941 ORTHO05D008361 4.6e-13 77.0 60 66.7
unitig_22.g6332 Utricularia gibba HOM05D006941 ORTHO05D008361 6.0e-13 76.6 50 72.0
Os12g0106550 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 7.8e-13 76.3 50 72.0
PSO302G0016 Papaver somniferum HOM05D006941 ORTHO05D008361 7.8e-13 76.3 50 76.0
DCAR_030574 Daucus carota HOM05D006941 ORTHO05D008361 1.0e-12 75.9 50 68.0
Hund22020 Selenicereus undatus HOM05D006941 ORTHO05D008361 1.7e-12 75.1 50 74.0
vmacro15274 Vaccinium macrocarpon HOM05D006941 ORTHO05D008361 3.0e-12 74.3 53 71.7
arahy.Tifrunner.gnm1.ann1.DDI179 Arachis hypogaea HOM05D006941 ORTHO05D008361 6.6e-12 73.2 63 63.5
arahy.Tifrunner.gnm1.ann1.UB09PE Arachis hypogaea HOM05D006941 ORTHO05D008361 6.6e-12 73.2 50 76.0
ClCG06G005480 Citrullus lanatus HOM05D006941 ORTHO05D008361 1.5e-11 72.0 64 60.9
Lj4g0022805 Lotus japonicus HOM05D006941 ORTHO05D008361 3.3e-11 70.9 50 74.0
Zm00001eb094170 Zea mays HOM05D006941 ORTHO05D008361 3.3e-11 70.9 50 68.0
Zm00001eb163280 Zea mays HOM05D006941 ORTHO05D008361 3.3e-11 70.9 50 68.0
SEGI_10041 Sequoiadendron giganteum HOM05D006941 ORTHO05D008361 1.3e-10 68.9 45 68.9
SHI00325 Sapria himalayana HOM05D006941 ORTHO05D008361 2.1e-10 68.2 50 66.0
SGA_v2.0_scaffold57G20266 Striga asiatica HOM05D006941 ORTHO05D008361 4.8e-10 67.0 79 51.9
Dinv16400 Davidia involucrata HOM05D006941 ORTHO05D008361 5.8e-08 60.1 41 68.3
VMungo0464G0431 Vigna mungo HOM05D006941 ORTHO05D008361 5.8e-08 60.1 109 37.6
PGSC0003DMG400029912 Solanum tuberosum HOM05D006941 ORTHO05D008361 7.6e-08 59.7 35 77.1
Sabra05G0058700 Salix brachista HOM05D006941 ORTHO05D008361 1.4e-06 55.5 30 86.7
Cpa.g.sc16.95 Carica papaya HOM05D006941 ORTHO05D008361 1.9e-06 55.1 29 86.2
Haze_01039 Corylus avellana HOM05D006941 ORTHO05D008361 3.2e-06 54.3 50 60.0
MD16G1176900 Malus domestica HOM05D006941 ORTHO05D008361 5.4e-06 53.5 30 83.3
Actinidia00061 Actinidia chinensis HOM05D006941 ORTHO05D008361 7.1e-06 53.1 30 83.3


User provided reference genes

Program Settings