Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0363061 Rosa chinensis HOM05D006193 ORTHO05D007808 6.6e-63 243.8 118 100.0
FvH4_7g19210 Fragaria vesca HOM05D006193 ORTHO05D007808 2.3e-55 218.8 117 91.5
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.3e-54 214.5 117 89.7
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 4.3e-54 214.5 117 89.7
Duzib114G0385 Durio zibethinus HOM05D006193 ORTHO05D007808 1.4e-49 199.5 114 80.7
Thecc.10G076000 Theobroma cacao HOM05D006193 ORTHO05D007808 3.2e-49 198.4 114 80.7
Manes.10G047101 Manihot esculenta HOM05D006193 ORTHO05D007808 4.1e-49 198.0 110 80.9
Haze_16878 Corylus avellana HOM05D006193 ORTHO05D007808 2.0e-48 195.7 110 79.1
Gohir.D06G175300 Gossypium hirsutum HOM05D006193 ORTHO05D007808 2.0e-48 195.7 114 78.1
Gorai.010G205700 Gossypium raimondii HOM05D006193 ORTHO05D007808 2.0e-48 195.7 114 78.1
Prupe.2G212200 Prunus persica HOM05D006193 ORTHO05D007808 2.0e-48 195.7 117 79.5
COL.COLO4_28414 Corchorus olitorius HOM05D006193 ORTHO05D007808 3.5e-48 194.9 110 82.7
Gohir.A06G167900 Gossypium hirsutum HOM05D006193 ORTHO05D007808 1.3e-47 193.0 114 77.2
Atru.chr12.797 Acer truncatum HOM05D006193 ORTHO05D007808 1.7e-47 192.6 110 80.0
Cfa001656 Carpinus fangiana HOM05D006193 ORTHO05D007808 6.6e-47 190.7 110 77.3
TWI63G1140 Tripterygium wilfordii HOM05D006193 ORTHO05D007808 1.1e-46 189.9 114 76.3
Cfa001990 Carpinus fangiana HOM05D006193 ORTHO05D007808 1.9e-46 189.1 110 76.4
FAN03G1544 Fragaria x ananassa HOM05D006193 ORTHO05D007808 1.9e-46 189.1 99 90.9
Ciclev10033053m.g Citrus clementina HOM05D006193 ORTHO05D007808 5.6e-46 187.6 123 73.2
CiPaw.02G173400 Carya illinoinensis HOM05D006193 ORTHO05D007808 1.2e-45 186.4 101 83.2
Actinidia38857 Actinidia chinensis HOM05D006193 ORTHO05D007808 2.8e-45 185.3 118 72.0
SalBow4G2149 Salvia bowleyana HOM05D006193 ORTHO05D007808 2.8e-45 185.3 109 77.1
Duzib128G0799 Durio zibethinus HOM05D006193 ORTHO05D007808 1.4e-44 183.0 121 73.6
MD01G1107500 Malus domestica HOM05D006193 ORTHO05D007808 1.8e-44 182.6 118 74.6
PGR044G2737 Punica granatum HOM05D006193 ORTHO05D007808 1.8e-44 182.6 108 79.6
Nn2g10831 Nelumbo nucifera HOM05D006193 ORTHO05D007808 3.1e-44 181.8 109 76.1
CANSAT54G0886 Cannabis sativa HOM05D006193 ORTHO05D007808 4.0e-44 181.4 119 74.8
THA.LOC104808680 Tarenaya hassleriana HOM05D006193 ORTHO05D007808 4.0e-44 181.4 110 75.5
TAR623G1160 Trochodendron aralioides HOM05D006193 ORTHO05D007808 5.2e-44 181.0 110 74.5
Thhalv10026557m.g Eutrema salsugineum HOM05D006193 ORTHO05D007808 6.8e-44 180.6 114 72.8
TAR369G0988 Trochodendron aralioides HOM05D006193 ORTHO05D007808 6.8e-44 180.6 110 73.6
QL08p055470 Quercus lobata HOM05D006193 ORTHO05D007808 1.2e-43 179.9 110 75.5
HanXRQChr08g0229761 Helianthus annuus HOM05D006193 ORTHO05D007808 1.5e-43 179.5 107 75.7
DCAR_016552 Daucus carota HOM05D006193 ORTHO05D007808 2.6e-43 178.7 111 72.1
TPR.G1973 Trifolium pratense HOM05D006193 ORTHO05D007808 3.4e-43 178.3 111 73.0
HanXRQChr01g0023971 Helianthus annuus HOM05D006193 ORTHO05D007808 4.4e-43 177.9 106 74.5
CSS0007064 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 5.8e-43 177.6 101 80.2
Sp7g11980 Schrenkiella parvula HOM05D006193 ORTHO05D007808 5.8e-43 177.6 110 73.6
Sed0026653 Sechium edule HOM05D006193 ORTHO05D007808 5.8e-43 177.6 110 72.7
Eucgr.J01081 Eucalyptus grandis HOM05D006193 ORTHO05D007808 7.5e-43 177.2 107 74.8
Lsat_1_v5_gn_1_77620 Lactuca sativa HOM05D006193 ORTHO05D007808 7.5e-43 177.2 111 70.3
Phvul.007G095900 Phaseolus vulgaris HOM05D006193 ORTHO05D007808 7.5e-43 177.2 103 77.7
VMungo0720G0734 Vigna mungo HOM05D006193 ORTHO05D007808 7.5e-43 177.2 103 77.7
AT4G14145 Arabidopsis thaliana HOM05D006193 ORTHO05D007808 9.8e-43 176.8 108 74.1
MSTRG.27474 Avicennia marina HOM05D006193 ORTHO05D007808 9.8e-43 176.8 109 73.4
Migut.F01979 Erythranthe guttata HOM05D006193 ORTHO05D007808 9.8e-43 176.8 109 76.1
ECA248G2014 Erigeron canadensis HOM05D006193 ORTHO05D007808 1.3e-42 176.4 107 72.0
Glyma.10G210100 Glycine max HOM05D006193 ORTHO05D007808 1.3e-42 176.4 103 76.7
Glyma.20G180500 Glycine max HOM05D006193 ORTHO05D007808 1.3e-42 176.4 103 76.7
Sed0026413 Sechium edule HOM05D006193 ORTHO05D007808 1.3e-42 176.4 117 70.1
BcaB04g18121 Brassica carinata HOM05D006193 ORTHO05D007808 1.7e-42 176.0 109 74.3
Migut.D01650 Erythranthe guttata HOM05D006193 ORTHO05D007808 1.7e-42 176.0 109 76.1
AL7G42250 Arabidopsis lyrata HOM05D006193 ORTHO05D007808 2.2e-42 175.6 108 73.1
Lalb_Chr01g0009491 Lupinus albus HOM05D006193 ORTHO05D007808 2.2e-42 175.6 106 74.5
Os03g0288400 Oryza sativa ssp. japonica HOM05D006193 ORTHO05D007808 2.2e-42 175.6 108 74.1
Cc02_g11260 Coffea canephora HOM05D006193 ORTHO05D007808 3.7e-42 174.9 108 75.9
Hund05693 Selenicereus undatus HOM05D006193 ORTHO05D007808 3.7e-42 174.9 126 67.5
Carub.0007s2828 Capsella rubella HOM05D006193 ORTHO05D007808 4.9e-42 174.5 110 71.8
Potri.010G223700 Populus trichocarpa HOM05D006193 ORTHO05D007808 4.9e-42 174.5 115 70.4
CARHR220160 Cardamine hirsuta HOM05D006193 ORTHO05D007808 6.4e-42 174.1 104 76.9
Nitab4.5_0000071g0090 Nicotiana tabacum HOM05D006193 ORTHO05D007808 8.3e-42 173.7 113 69.9
Lj5g0007819 Lotus japonicus HOM05D006193 ORTHO05D007808 1.1e-41 173.3 99 78.8
BcaC07g37722 Brassica carinata HOM05D006193 ORTHO05D007808 1.9e-41 172.6 102 77.5
A08p10360 Brassica napus HOM05D006193 ORTHO05D007808 1.9e-41 172.6 102 77.5
BolC8t48104H Brassica oleracea HOM05D006193 ORTHO05D007808 1.9e-41 172.6 102 77.5
BraA08t33036Z Brassica rapa HOM05D006193 ORTHO05D007808 1.9e-41 172.6 102 77.5
Peaxi162Scf00370g00117 Petunia axillaris HOM05D006193 ORTHO05D007808 1.9e-41 172.6 108 72.2
CAN.G108.21 Capsicum annuum HOM05D006193 ORTHO05D007808 2.4e-41 172.2 109 72.5
Nitab4.5_0006507g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 2.4e-41 172.2 107 72.9
Solyc03g007490.3 Solanum lycopersicum HOM05D006193 ORTHO05D007808 3.2e-41 171.8 109 72.5
Sopen03g003450 Solanum pennellii HOM05D006193 ORTHO05D007808 3.2e-41 171.8 109 72.5
Peaxi162Scf00011g01839 Petunia axillaris HOM05D006193 ORTHO05D007808 4.1e-41 171.4 109 70.6
PSO832G3015 Papaver somniferum HOM05D006193 ORTHO05D007808 7.1e-41 170.6 111 67.6
PSO210G4078 Papaver somniferum HOM05D006193 ORTHO05D007808 9.2e-41 170.2 111 67.6
SGA_v2.0_scaffold355G49780 Striga asiatica HOM05D006193 ORTHO05D007808 9.2e-41 170.2 108 72.2
PGSC0003DMG400009070 Solanum tuberosum HOM05D006193 ORTHO05D007808 1.2e-40 169.9 109 71.6
arahy.Tifrunner.gnm1.ann1.4G5N71 Arachis hypogaea HOM05D006193 ORTHO05D007808 1.6e-40 169.5 109 71.6
MBI07_g44648_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 2.7e-40 168.7 114 67.5
arahy.Tifrunner.gnm1.ann1.889ECD Arachis hypogaea HOM05D006193 ORTHO05D007808 3.5e-40 168.3 109 71.6
Aqoxy1G03645 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 7.8e-40 167.2 111 66.7
Sc20g0001780 Simmondsia chinensis HOM05D006193 ORTHO05D007808 7.8e-40 167.2 129 66.7
Aa31LG9G3240 Aethionema arabicum HOM05D006193 ORTHO05D007808 2.3e-39 165.6 103 72.8
A08p24240 Brassica napus HOM05D006193 ORTHO05D007808 2.3e-39 165.6 104 73.1
HPP92_011207 Vanilla planifolia HOM05D006193 ORTHO05D007808 2.3e-39 165.6 108 70.4
Zm00001eb062340 Zea mays HOM05D006193 ORTHO05D007808 2.3e-39 165.6 99 75.8
CiPaw.16G031600 Carya illinoinensis HOM05D006193 ORTHO05D007808 5.1e-39 164.5 98 76.5
GSVIVG01016260001 Vitis vinifera HOM05D006193 ORTHO05D007808 6.6e-39 164.1 113 60.2
ATR0329G030 Amborella trichopoda HOM05D006193 ORTHO05D007808 8.6e-39 163.7 110 65.5
BcaC01g00219 Brassica carinata HOM05D006193 ORTHO05D007808 8.6e-39 163.7 102 72.5
BraA08t34379Z Brassica rapa HOM05D006193 ORTHO05D007808 1.1e-38 163.3 102 71.6
Oeu014384.2 Olea europaea HOM05D006193 ORTHO05D007808 4.3e-38 161.4 136 58.1
SGA_v2.0_scaffold250G44987 Striga asiatica HOM05D006193 ORTHO05D007808 7.3e-38 160.6 106 67.0
Oeu042739.1 Olea europaea HOM05D006193 ORTHO05D007808 4.7e-37 157.9 122 62.3
unitig_37.g12308 Utricularia gibba HOM05D006193 ORTHO05D007808 8.1e-37 157.1 100 70.0
ClCG05G021080 Citrullus lanatus HOM05D006193 ORTHO05D007808 1.1e-36 156.8 130 60.8
MELO3C012421.2 Cucumis melo HOM05D006193 ORTHO05D007808 1.8e-36 156.0 153 53.6
CDE03G0070 Ceratophyllum demersum HOM05D006193 ORTHO05D007808 2.3e-36 155.6 107 61.7
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 3.1e-36 155.2 112 66.1
Sabra10G0173000 Salix brachista HOM05D006193 ORTHO05D007808 1.2e-35 153.3 154 51.3
Aqoxy1G03181 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 1.3e-34 149.8 106 67.0
FAN19G2294 Fragaria x ananassa HOM05D006193 ORTHO05D007808 1.7e-34 149.4 87 87.4
Rhsim03G0119300 Rhododendron simsii HOM05D006193 ORTHO05D007808 3.8e-34 148.3 187 44.4
EL10Ac7g18239 Beta vulgaris HOM05D006193 ORTHO05D007808 3.2e-33 145.2 126 58.7
Psat6g182760 Pisum sativum HOM05D006193 ORTHO05D007808 1.3e-31 139.8 88 71.6
Ca_10561_v3 Cicer arietinum L. HOM05D006193 ORTHO05D007808 1.7e-31 139.4 84 77.4
arahy.Tifrunner.gnm1.ann1.N5AHK9 Arachis hypogaea HOM05D006193 ORTHO05D007808 5.1e-31 137.9 86 74.4
arahy.Tifrunner.gnm1.ann1.D81QGL Arachis hypogaea HOM05D006193 ORTHO05D007808 8.6e-31 137.1 86 73.3
AUR62001381 Chenopodium quinoa HOM05D006193 ORTHO05D007808 2.8e-29 132.1 93 67.7
Ah.08g217480 Amaranthus hybridus HOM05D006193 ORTHO05D007808 4.7e-29 131.3 100 64.0
FAN06G3393 Fragaria x ananassa HOM05D006193 ORTHO05D007808 2.0e-27 125.9 68 86.8
Mapoly0038s0090 Marchantia polymorpha HOM05D006193 ORTHO05D007808 5.4e-25 117.9 101 52.5
vmacro07063 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 1.6e-24 116.3 65 83.1
Medtr1g094840 Medicago truncatula HOM05D006193 ORTHO05D007808 3.5e-24 115.2 71 73.2
MBI07_g30981_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 2.3e-23 112.5 113 50.4
BolC3t19959H Brassica oleracea HOM05D006193 ORTHO05D007808 2.1e-21 105.9 54 87.0
CsaV3_5G036210 Cucumis sativus L. HOM05D006193 ORTHO05D007808 2.8e-21 105.5 67 71.6
EL10Ac7g17093 Beta vulgaris HOM05D006193 ORTHO05D007808 6.4e-18 94.4 66 69.7
Lsat_1_v5_gn_2_8120 Lactuca sativa HOM05D006193 ORTHO05D007808 6.4e-18 94.4 84 52.4
AagrBONN_evm.TU.Sc2ySwM_228.264 Anthoceros agrestis HOM05D006193 ORTHO05D007808 3.2e-17 92.0 105 42.9
SMO232G0066 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 3.5e-16 88.6 98 37.8
Pp3c5_20880 Physcomitrium patens HOM05D006193 ORTHO05D007808 1.0e-15 87.0 103 40.8
Nitab4.5_0005501g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 1.9e-14 82.8 86 47.7
Potri.008G038500 Populus trichocarpa HOM05D006193 ORTHO05D007808 5.6e-14 81.3 52 73.1
SMO241G0021 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 9.6e-14 80.5 90 36.7
vmacro07064 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 6.4e-10 67.8 47 61.7
CSS0043670 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 4.6e-08 61.6 77 46.8
FAN06G1284 Fragaria x ananassa HOM05D006193 ORTHO05D199227 4.3e-06 55.1 26 96.2


User provided reference genes

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