Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 1.1e-110 403.3 199 100.0
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.6e-77 293.1 244 64.3
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.0e-77 291.2 244 63.5
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 1.3e-76 290.0 244 63.5
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.1e-75 287.0 244 63.5
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.3e-75 285.0 244 62.3
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.4e-65 253.4 218 61.0
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 6.1e-53 211.5 198 58.6
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.0e-51 206.5 193 59.6
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 2.6e-51 206.1 198 55.6
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 4.4e-51 205.3 242 50.4
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 8.2e-50 201.1 188 57.4
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 1.8e-49 199.9 195 57.9
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 3.2e-46 189.1 162 59.9
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 1.2e-45 187.2 185 57.3
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 2.1e-45 186.4 189 56.6
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 4.7e-45 185.3 188 53.2
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 6.1e-45 184.9 194 56.2
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 1.8e-44 183.3 194 55.2
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 1.2e-43 180.6 191 53.9
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 1.5e-43 180.3 187 53.5
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.5e-43 177.9 159 57.9
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 7.5e-43 177.9 191 52.9
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.7e-42 176.8 188 53.7
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 1.7e-42 176.8 196 53.1
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 6.3e-42 174.9 191 52.4
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 8.2e-42 174.5 185 53.0
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 1.1e-41 174.1 162 58.0
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 3.1e-41 172.6 194 51.0
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 4.1e-41 172.2 190 51.6
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 5.3e-41 171.8 191 53.4
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 7.0e-41 171.4 191 51.3
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 9.1e-41 171.0 193 52.3
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 9.1e-41 171.0 185 51.4
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 1.2e-40 170.6 192 51.0
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 2.0e-40 169.9 195 51.8
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 2.0e-40 169.9 166 56.0
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 2.0e-40 169.9 156 54.5
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 3.5e-40 169.1 190 53.2
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 4.5e-40 168.7 191 52.9
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 5.9e-40 168.3 164 53.0
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 1.7e-39 166.8 155 55.5
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 5.0e-39 165.2 196 50.5
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 8.5e-39 164.5 199 48.7
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.1e-38 164.1 196 51.0
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 2.5e-38 162.9 193 48.7
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 1.6e-37 160.2 149 57.7
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 3.6e-37 159.1 180 51.7
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 6.1e-37 158.3 190 49.5
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 6.1e-37 158.3 187 48.7
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 1.0e-36 157.5 189 47.1
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 1.0e-36 157.5 198 48.0
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.0e-36 157.5 191 47.6
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.0e-36 157.5 191 47.6
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.0e-36 157.5 191 47.6
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 1.8e-36 156.8 190 47.4
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 1.8e-36 156.8 186 47.3
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 2.3e-36 156.4 189 49.2
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 1.2e-35 154.1 179 50.3
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 2.6e-35 152.9 189 43.9
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 4.4e-35 152.1 194 47.4
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 4.4e-35 152.1 197 49.7
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 4.4e-35 152.1 193 45.6
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 5.7e-35 151.8 188 47.9
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 5.7e-35 151.8 198 48.5
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 1.3e-34 150.6 195 46.2
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 1.3e-34 150.6 132 59.8
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.3e-34 150.6 99 68.7
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 1.7e-34 150.2 188 47.3
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 1.7e-34 150.2 168 48.2
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 2.8e-34 149.4 186 45.7
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 2.8e-34 149.4 156 52.6
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 2.8e-34 149.4 192 44.8
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 4.8e-34 148.7 98 69.4
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 6.3e-34 148.3 186 46.2
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 6.3e-34 148.3 174 51.1
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 8.3e-34 147.9 147 51.7
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 8.3e-34 147.9 189 49.2
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 8.3e-34 147.9 162 50.6
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 1.4e-33 147.1 190 47.4
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 1.8e-33 146.7 101 66.3
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 2.4e-33 146.4 144 52.1
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 4.1e-33 145.6 131 54.2
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 5.4e-33 145.2 166 50.6
FAN10G2891 Fragaria x ananassa HOM05D005893 ORTHO05D007295 7.0e-33 144.8 161 52.8
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 7.0e-33 144.8 104 61.5
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 9.1e-33 144.4 129 58.1
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 1.2e-32 144.1 190 45.8
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.6e-32 143.7 180 46.7
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 2.7e-32 142.9 204 44.6
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 3.5e-32 142.5 191 46.1
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 4.5e-32 142.1 162 47.5
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 4.5e-32 142.1 180 49.4
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.3e-31 140.6 129 55.8
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 2.2e-31 139.8 141 49.6
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 2.2e-31 139.8 194 43.3
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 2.2e-31 139.8 194 43.3
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 3.8e-31 139.0 168 48.8
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 5.0e-31 138.7 164 47.6
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 5.0e-31 138.7 91 69.2
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 1.1e-30 137.5 91 69.2
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 1.1e-30 137.5 194 43.8
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 1.5e-30 137.1 193 42.0
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 3.2e-30 136.0 187 42.2
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 4.2e-30 135.6 91 65.9
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 5.5e-30 135.2 201 43.3
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 7.2e-30 134.8 195 45.1
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 9.5e-30 134.4 92 67.4
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 3.6e-29 132.5 92 66.3
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 4.7e-29 132.1 201 42.3
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 4.7e-29 132.1 196 43.4
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 1.4e-28 130.6 111 55.0
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 1.8e-28 130.2 145 44.1
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 3.0e-28 129.4 81 74.1
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.8e-25 120.2 145 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 2.4e-25 119.8 139 46.0
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 6.6e-23 111.7 91 51.6
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 1.5e-22 110.5 89 55.1
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 5.6e-22 108.6 74 64.9
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 5.6e-22 108.6 109 46.8
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 1.0e-20 104.4 72 62.5
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 1.1e-17 94.4 133 36.1
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.8e-17 93.6 136 41.9
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 2.7e-16 89.7 177 32.8
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.6e-16 89.0 91 49.5
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 6.6e-15 85.1 115 45.2
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.5e-14 83.2 136 40.4
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 3.1e-12 76.3 122 41.8
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 2.0e-11 73.6 48 62.5
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 4.4e-11 72.4 169 33.1
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 5.8e-11 72.0 51 58.8
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 1.7e-10 70.5 53 62.3
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 7.0e-09 65.1 78 43.6
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.0e-07 61.2 76 44.7
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.3e-07 60.8 182 25.3
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 2.3e-07 60.1 84 38.1
Zm00001eb161510 Zea mays HOM05D002826 ORTHO05D003105 3.0e-07 59.7 80 37.5
FvH4_4g28420 Fragaria vesca HOM05D002826 ORTHO05D003105 6.6e-07 58.5 54 46.3
FAN07G1210 Fragaria x ananassa HOM05D002826 ORTHO05D003105 6.6e-07 58.5 54 46.3
FAN12G4176 Fragaria x ananassa HOM05D002826 ORTHO05D003105 6.6e-07 58.5 54 46.3
FAN22G0168 Fragaria x ananassa HOM05D002826 ORTHO05D003105 6.6e-07 58.5 54 46.3
MD13G1049900 Malus domestica HOM05D002826 ORTHO05D003105 6.6e-07 58.5 61 41.0
RcHm_v2.0_Chr4g0436371 Rosa chinensis HOM05D002826 ORTHO05D003105 6.6e-07 58.5 54 46.3
ATR0743G230 Amborella trichopoda HOM05D002826 ORTHO05D003105 8.6e-07 58.2 85 35.3
MD16G1050900 Malus domestica HOM05D002826 ORTHO05D003105 1.1e-06 57.8 60 41.7
Mapoly0005s0251 Marchantia polymorpha HOM05D002826 ORTHO05D003105 1.1e-06 57.8 91 33.0
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 1.5e-06 57.4 54 42.6
CsaV3_5G033810 Cucumis sativus L. HOM05D002826 ORTHO05D003105 3.3e-06 56.2 82 35.4
TWI75G1715 Tripterygium wilfordii HOM05D002826 ORTHO05D003105 3.3e-06 56.2 99 34.3
HanXRQChr16g0527021 Helianthus annuus HOM05D002826 ORTHO05D003105 4.3e-06 55.8 87 32.2
Manes.14G095500 Manihot esculenta HOM05D002826 ORTHO05D003105 4.3e-06 55.8 60 41.7
MELO3C012198.2 Cucumis melo HOM05D002826 ORTHO05D003105 5.6e-06 55.5 54 42.6
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 5.6e-06 55.5 54 42.6
TPR.G2677 Trifolium pratense HOM05D002826 ORTHO05D003105 5.6e-06 55.5 87 36.8
HPP92_014544 Vanilla planifolia HOM05D002236 ORTHO05D002341 5.6e-06 55.5 69 37.7
Medtr4g045783 Medicago truncatula HOM05D002826 ORTHO05D003105 7.3e-06 55.1 54 42.6
Psat2g088920 Pisum sativum HOM05D002826 ORTHO05D003105 7.3e-06 55.1 54 40.7
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 7.3e-06 55.1 54 42.6


User provided reference genes

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