Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 2057.3 1068 100.0
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1972.6 1069 95.5
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1939.5 1069 94.5
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1930.6 1069 94.0
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1890.5 1069 91.0
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1833.5 1069 88.7
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1783.5 1024 89.6
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1750.7 1074 84.4
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1739.2 1075 83.7
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1736.1 1067 87.3
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1735.3 1087 82.4
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1727.6 1080 82.8
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1725.7 1077 82.4
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1721.4 1099 84.1
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1717.2 1075 82.7
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1711.4 1076 82.2
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1703.3 1073 82.5
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1699.5 1067 81.8
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1697.9 1077 81.6
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1697.6 1071 82.3
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1692.2 1079 81.5
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1682.9 1072 81.9
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1682.5 1071 81.2
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1679.5 1079 80.1
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1677.9 1074 81.7
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1672.9 1074 81.4
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1669.8 1083 80.2
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1669.4 1074 80.0
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1667.9 1077 81.4
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1667.1 1066 80.6
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1660.2 1080 79.4
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1652.1 1072 80.0
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1650.2 1040 81.5
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1650.2 1078 79.9
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1641.7 1058 84.0
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1640.2 1072 79.4
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1632.5 1067 80.2
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1632.1 1072 78.4
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1627.5 1071 78.6
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1620.1 1079 77.7
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1618.2 1075 78.0
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1609.0 1053 83.1
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1607.8 1079 77.4
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1604.7 1075 77.2
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1598.9 1072 78.3
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1596.3 1071 78.2
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1595.5 1075 77.0
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1593.6 1075 76.6
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1588.9 1076 76.3
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1587.4 1071 77.7
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1583.5 1085 76.6
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1572.4 1071 76.7
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1568.5 1070 76.2
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1559.3 1162 72.2
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1558.5 1078 74.8
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1538.9 1092 73.9
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1530.4 1115 73.3
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1524.6 1071 73.9
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1520.8 1070 73.5
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1516.1 1082 74.8
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1515.4 1068 73.8
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1513.8 1069 75.8
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1510.4 1070 73.0
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1508.4 1070 73.2
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1506.5 1091 72.6
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1503.8 1137 72.4
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1503.0 1086 72.4
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1502.6 1086 72.4
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1501.5 1150 72.2
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1496.1 1070 72.6
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1495.3 988 78.8
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1494.6 1071 72.6
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1486.5 1105 71.1
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1075 71.5
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1483.0 1071 72.3
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1478.4 1188 69.5
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1477.2 1105 70.3
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1471.8 1068 71.9
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1471.8 1000 76.1
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1468.8 1067 71.8
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1468.0 1090 70.5
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1461.0 1069 71.6
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1459.9 1058 72.1
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1450.3 1064 71.3
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1447.6 1072 70.8
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1443.7 1090 69.6
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1443.3 946 79.0
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1441.0 1090 69.8
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1431.4 1070 70.1
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1421.0 1090 69.3
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1414.4 1075 69.1
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1401.7 1091 70.1
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1397.9 1042 71.5
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1389.8 1114 68.5
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1385.5 1069 69.2
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1350.1 1101 65.7
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1333.2 1172 65.1
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1322.0 1071 64.9
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1313.1 1070 64.8
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1306.2 1022 68.2
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1295.4 1069 63.5
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1288.9 1059 67.2
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1275.4 876 76.3
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1265.0 1263 57.9
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1216.8 738 84.8
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1193.3 1073 61.9
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1166.4 909 69.6
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1162.5 905 67.3
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1080.5 972 63.1
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 0.0e+00 1076.2 724 78.3
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.3e-295 1019.2 1097 52.0
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 1.6e-293 1013.1 1084 51.8
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 3.6e-285 985.3 631 81.6
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.9e-282 975.7 837 65.9
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.5e-270 936.8 1087 49.1
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.4e-259 899.0 777 65.4
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.1e-257 894.0 1077 47.6
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 3.0e-247 859.4 1053 46.8
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.0e-227 793.5 563 75.0
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.4e-225 787.3 515 77.9
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 4.3e-222 775.8 561 72.0
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 1.4e-212 744.2 708 59.0
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 3.1e-212 743.0 580 69.0
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.9e-209 733.8 565 70.4
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.3e-206 723.0 533 73.5
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.5e-198 695.3 840 51.3
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 2.1e-192 677.2 805 49.1
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.5e-185 654.4 1231 36.1
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 5.2e-175 619.4 428 74.8
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.1e-159 568.5 401 74.3
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 7.1e-156 555.8 373 79.1
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 2.4e-148 530.8 348 79.3
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.6e-137 493.0 394 66.0
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 4.5e-134 483.4 359 73.0
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 9.6e-129 465.7 347 73.8
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.8e-127 461.5 320 76.6
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.6e-126 457.6 366 69.1
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.3e-120 438.7 270 84.4
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.4e-116 425.2 282 79.1
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.7e-91 341.3 364 54.9
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 6.1e-91 340.1 228 77.6
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 2.3e-74 285.0 178 79.2
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.9e-69 268.1 194 73.2
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 2.5e-60 238.4 143 80.4
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.6e-59 234.6 162 72.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 4.1e-55 221.1 139 78.4
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.6e-52 210.7 108 95.4
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 1.6e-51 209.1 129 82.2
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 3.5e-46 191.4 138 66.7
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 3.7e-40 171.4 169 57.4
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 4.9e-40 171.0 118 72.9
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 9.5e-36 156.8 161 57.1
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.6e-35 156.0 96 81.2
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 3.6e-35 154.8 103 73.8
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.1e-34 153.3 85 85.9
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.8e-34 152.5 103 73.8
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 4.4e-33 147.9 111 70.3
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 6.4e-32 144.1 86 77.9
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.1e-29 134.4 87 72.4
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 7.3e-28 130.6 92 75.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.2e-27 129.8 86 76.7
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 6.2e-27 127.5 87 77.0
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-26 126.7 85 69.4
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 2.6e-25 122.1 79 70.9
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 5.8e-25 120.9 209 32.1
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 3.0e-21 108.6 82 68.3
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 3.0e-21 108.6 82 68.3
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 7.3e-20 104.0 81 63.0
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 9.6e-20 103.6 99 57.6
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 2.9e-16 92.0 71 67.6
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.9e-15 89.4 62 71.0
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.9e-15 89.4 62 71.0
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.1e-14 85.9 49 83.7
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.6e-11 76.3 48 77.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 8.1e-11 73.9 58 63.8
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 4.0e-10 71.6 68 60.3
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 2.0e-09 69.3 52 71.2
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 4.9e-08 64.7 52 53.8


User provided reference genes

Program Settings