Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 2.8e-71 271.9 146 100.0
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 2.8e-71 271.9 146 100.0
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 9.0e-70 266.9 146 98.6
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.5e-69 266.2 146 97.3
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 2.2e-68 262.3 146 96.6
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.2e-68 262.3 146 96.6
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.2e-68 262.3 146 95.9
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 6.4e-68 260.8 146 94.5
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 4.8e-63 244.6 150 89.3
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 4.5e-61 238.0 148 87.8
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 5.8e-61 237.7 144 85.4
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 7.6e-61 237.3 140 88.6
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 8.4e-60 233.8 146 84.9
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.9e-59 232.6 141 87.9
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 3.2e-59 231.9 144 83.3
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.6e-58 229.6 141 84.4
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 2.1e-58 229.2 140 85.7
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 2.1e-58 229.2 144 82.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 2.7e-58 228.8 140 85.0
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 3.5e-58 228.4 142 85.2
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 3.5e-58 228.4 144 84.0
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 4.6e-58 228.0 142 84.5
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 4.6e-58 228.0 142 84.5
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 6.0e-58 227.6 139 84.2
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 6.0e-58 227.6 144 81.2
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.0e-57 226.9 138 85.5
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.0e-57 226.9 140 84.3
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.0e-57 226.9 144 80.6
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.0e-57 226.9 140 82.9
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.3e-57 226.5 143 82.5
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.8e-57 226.1 145 81.4
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.8e-57 226.1 145 80.0
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 3.9e-57 224.9 145 80.0
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 3.9e-57 224.9 143 81.1
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 5.1e-57 224.6 140 82.1
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 6.7e-57 224.2 141 80.1
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 6.7e-57 224.2 145 82.1
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 8.7e-57 223.8 144 79.9
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 8.7e-57 223.8 138 82.6
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.1e-56 223.4 145 81.4
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 1.1e-56 223.4 144 81.9
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 1.1e-56 223.4 145 80.7
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.5e-56 223.0 142 82.4
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.5e-56 223.0 144 81.9
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.9e-56 222.6 146 82.2
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 1.9e-56 222.6 143 80.4
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.9e-56 222.6 138 84.1
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 2.5e-56 222.2 148 81.1
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.3e-56 221.9 150 79.3
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 3.3e-56 221.9 146 80.8
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 3.3e-56 221.9 140 82.9
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.3e-56 221.5 144 80.6
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.3e-56 221.5 144 80.6
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.3e-56 221.5 145 79.3
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.3e-56 221.5 145 79.3
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 4.3e-56 221.5 145 79.3
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 4.3e-56 221.5 135 83.0
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 4.3e-56 221.5 147 79.6
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 5.6e-56 221.1 138 84.1
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.6e-56 221.1 145 79.3
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 5.6e-56 221.1 144 79.2
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 7.4e-56 220.7 145 78.6
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 7.4e-56 220.7 145 79.3
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 7.4e-56 220.7 145 79.3
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 9.6e-56 220.3 136 83.1
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 9.6e-56 220.3 147 78.9
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 9.6e-56 220.3 146 79.5
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.3e-55 219.9 140 81.4
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.3e-55 219.9 140 81.4
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.1e-55 219.2 144 77.8
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 2.1e-55 219.2 143 80.4
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 2.8e-55 218.8 145 77.9
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.8e-55 218.8 141 78.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 3.7e-55 218.4 144 81.9
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 3.7e-55 218.4 144 81.2
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 4.8e-55 218.0 141 80.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 4.8e-55 218.0 143 79.7
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 6.2e-55 217.6 144 81.2
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 8.1e-55 217.2 142 79.6
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.1e-54 216.9 141 78.7
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.8e-54 216.1 146 78.1
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.4e-54 215.7 144 78.5
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 2.4e-54 215.7 134 82.1
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.4e-54 215.7 141 79.4
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 4.0e-54 214.9 141 77.3
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 4.0e-54 214.9 145 77.2
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 5.3e-54 214.5 142 78.9
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 6.9e-54 214.2 143 78.3
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.0e-53 212.6 143 76.2
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 2.6e-53 212.2 141 79.4
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 4.5e-53 211.5 143 77.6
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.7e-52 209.5 141 75.9
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 1.7e-52 209.5 136 77.2
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 3.8e-52 208.4 145 74.5
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 6.4e-52 207.6 136 76.5
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 6.4e-52 207.6 136 77.9
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 6.4e-52 207.6 135 79.3
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 6.4e-52 207.6 142 77.5
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 8.4e-52 207.2 136 77.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 8.4e-52 207.2 136 75.0
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 2.4e-51 205.7 125 88.0
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 4.2e-51 204.9 145 74.5
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.7e-50 202.2 140 75.7
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 3.5e-50 201.8 140 73.6
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.0e-49 200.3 137 75.9
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 3.0e-49 198.7 145 73.8
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 7.4e-48 194.1 145 72.4
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 9.6e-48 193.7 137 71.5
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 8.2e-47 190.7 139 71.9
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 1.1e-46 190.3 116 82.8
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 1.4e-46 189.9 138 72.5
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 138 72.5
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 1.4e-46 189.9 138 72.5
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 5.3e-46 188.0 139 69.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 5.3e-46 188.0 140 71.4
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.2e-45 186.8 142 68.3
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.5e-45 186.4 136 70.6
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 1.5e-45 186.4 140 70.7
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 1.5e-45 186.4 137 70.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.0e-45 186.0 140 69.3
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 2.6e-45 185.7 144 66.0
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.6e-45 185.7 141 68.8
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 3.4e-45 185.3 144 69.4
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 1.0e-44 183.7 137 67.2
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 6.5e-44 181.0 144 70.1
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 2.5e-43 179.1 144 69.4
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 7.1e-43 177.6 138 70.3
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 7.1e-43 177.6 138 70.3
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 2.7e-42 175.6 135 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 7.9e-42 174.1 137 63.5
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.0e-41 173.7 140 67.1
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 5.1e-41 171.4 119 77.3
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.6e-39 166.4 144 64.6
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 2.8e-39 165.6 134 62.7
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 5.5e-35 151.4 135 57.8
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.6e-34 148.7 132 59.8
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 3.0e-33 145.6 130 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.3e-32 142.1 107 63.6
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 4.5e-29 131.7 137 55.5
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.3e-25 119.4 109 62.4
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.2e-23 112.8 86 70.9
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 1.1e-22 110.5 95 66.3
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 2.6e-21 105.9 138 39.9
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 2.9e-20 102.4 138 39.1
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.1e-14 84.0 87 50.6
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 3.5e-13 79.0 50 80.0


User provided reference genes

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