Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0362451 Rosa chinensis HOM05D000651 ORTHO05D348905 2.0e-46 189.1 121 100.0
FvH4_7g18691 Fragaria vesca HOM05D000651 ORTHO05D001126 2.0e-14 82.8 46 84.8
FAN06G1796 Fragaria x ananassa HOM05D000651 ORTHO05D001126 2.0e-14 82.8 46 84.8
FAN06G3799 Fragaria x ananassa HOM05D000651 ORTHO05D001126 2.0e-14 82.8 46 84.8
FAN10G0458 Fragaria x ananassa HOM05D000651 ORTHO05D001126 2.0e-14 82.8 46 84.8
FAN10G1324 Fragaria x ananassa HOM05D000651 ORTHO05D001126 2.0e-14 82.8 42 90.5
FAN03G1696 Fragaria x ananassa HOM05D000651 ORTHO05D001126 2.6e-14 82.4 46 82.6
FAN01G1722 Fragaria x ananassa HOM05D000651 ORTHO05D001126 9.8e-14 80.5 46 80.4
RcHm_v2.0_Chr1g0362481 Rosa chinensis HOM05D000651 ORTHO05D001126 2.9e-13 79.0 46 80.4
DCAR_006406 Daucus carota HOM05D000651 ORTHO05D001126 3.9e-10 68.6 44 65.9
Cfa001804 Carpinus fangiana HOM05D000651 ORTHO05D001126 8.6e-10 67.4 49 71.4
PSO063G6249 Papaver somniferum HOM05D000651 ORTHO05D001126 8.6e-10 67.4 39 71.8
Prupe.1G099300 Prunus persica HOM05D000651 ORTHO05D028847 8.6e-10 67.4 39 79.5
Prupe.2G208200 Prunus persica HOM05D000651 ORTHO05D001126 8.6e-10 67.4 39 79.5
Haze_16744 Corylus avellana HOM05D000651 ORTHO05D001126 1.1e-09 67.0 49 71.4
PSO339G1454 Papaver somniferum HOM05D000651 ORTHO05D001126 1.9e-09 66.2 39 71.8
QL08p054184 Quercus lobata HOM05D000651 ORTHO05D001126 5.6e-09 64.7 41 75.6
HanXRQChr14g0455731 Helianthus annuus HOM05D000651 ORTHO05D001126 7.3e-09 64.3 41 70.7
Manes.07G133132 Manihot esculenta HOM05D000651 ORTHO05D001126 7.3e-09 64.3 43 74.4
Hma1.2p1_0145F.1_g065290 Hydrangea macrophylla HOM05D000651 ORTHO05D001126 1.6e-08 63.2 42 69.0
Cpa.g.sc53.140 Carica papaya HOM05D000651 ORTHO05D001126 2.1e-08 62.8 46 58.7
HanXRQChr05g0161301 Helianthus annuus HOM05D000651 ORTHO05D001126 2.1e-08 62.8 41 65.9
MD01G1102600 Malus domestica HOM05D000651 ORTHO05D001126 2.1e-08 62.8 56 58.9
PSO801G0506 Papaver somniferum HOM05D000651 ORTHO05D001126 2.1e-08 62.8 41 70.7
Dinv36388 Davidia involucrata HOM05D000651 ORTHO05D001126 2.8e-08 62.4 42 69.0
MD07G1169500 Malus domestica HOM05D000651 ORTHO05D001126 2.8e-08 62.4 56 57.1
Aqoxy2G01730 Aquilegia oxysepala HOM05D000651 ORTHO05D001126 3.6e-08 62.0 41 70.7
PSO339G0356 Papaver somniferum HOM05D000651 ORTHO05D001126 4.7e-08 61.6 56 55.4
Nitab4.5_0006187g0030 Nicotiana tabacum HOM05D000651 ORTHO05D001126 6.2e-08 61.2 49 61.2
Atru.chr12.857 Acer truncatum HOM05D000651 ORTHO05D001126 1.1e-07 60.5 41 65.9
Actinidia38872 Actinidia chinensis HOM05D000651 ORTHO05D001126 1.1e-07 60.5 45 62.2
Lsat_1_v5_gn_2_113081 Lactuca sativa HOM05D000651 ORTHO05D001126 1.4e-07 60.1 51 56.9
Dinv31239 Davidia involucrata HOM05D000651 ORTHO05D001126 1.8e-07 59.7 42 66.7
Potri.010G227700 Populus trichocarpa HOM05D000651 ORTHO05D001126 1.8e-07 59.7 43 65.1
Sabra10G0175600 Salix brachista HOM05D000651 ORTHO05D001126 1.8e-07 59.7 43 65.1
Solyc11g008280.3 Solanum lycopersicum HOM05D000651 ORTHO05D001126 1.8e-07 59.7 42 64.3
Sopen11g004090 Solanum pennellii HOM05D000651 ORTHO05D001126 1.8e-07 59.7 42 64.3
COL.COLO4_36176 Corchorus olitorius HOM05D000651 ORTHO05D001126 2.3e-07 59.3 44 59.1
Manes.10G050700 Manihot esculenta HOM05D000651 ORTHO05D001126 2.3e-07 59.3 43 69.8
PGSC0003DMG400031068 Solanum tuberosum HOM05D000651 ORTHO05D001126 2.3e-07 59.3 42 66.7
TPR.G22705 Trifolium pratense HOM05D000651 ORTHO05D001126 2.3e-07 59.3 44 56.8
CANSAT56G1256 Cannabis sativa HOM05D000651 ORTHO05D001126 3.1e-07 58.9 41 61.0
ClCG08G007760 Citrullus lanatus HOM05D000651 ORTHO05D001126 3.1e-07 58.9 42 64.3
Migut.F01951 Erythranthe guttata HOM05D000651 ORTHO05D001126 3.1e-07 58.9 45 55.6
Eucgr.G02873 Eucalyptus grandis HOM05D000651 ORTHO05D001126 3.1e-07 58.9 41 65.9
Hma1.2p1_0838F.1_g226280 Hydrangea macrophylla HOM05D000651 ORTHO05D001126 3.1e-07 58.9 45 62.2
Lj5g0004289 Lotus japonicus HOM05D000651 ORTHO05D001126 4.0e-07 58.5 40 67.5
Nitab4.5_0001450g0220 Nicotiana tabacum HOM05D000651 ORTHO05D001126 5.2e-07 58.2 49 59.2
THA.LOC104816426 Tarenaya hassleriana HOM05D000651 ORTHO05D001126 5.2e-07 58.2 42 54.8
Cc02_g10850 Coffea canephora HOM05D000651 ORTHO05D001126 6.8e-07 57.8 46 56.5
Oeu033871.1 Olea europaea HOM05D000651 ORTHO05D001126 6.8e-07 57.8 39 59.0
Sed0014081 Sechium edule HOM05D000651 ORTHO05D001126 6.8e-07 57.8 41 65.9
TWI15G1057 Tripterygium wilfordii HOM05D000651 ORTHO05D001126 6.8e-07 57.8 45 64.4
Duzib128G1575 Durio zibethinus HOM05D000651 ORTHO05D001126 8.9e-07 57.4 50 52.0
FvH4_2g40053 Fragaria vesca HOM05D000651 ORTHO05D035305 8.9e-07 57.4 40 67.5
Lsat_1_v5_gn_9_70180 Lactuca sativa HOM05D000651 ORTHO05D001126 8.9e-07 57.4 45 55.6
Lsat_1_v5_gn_9_70241 Lactuca sativa HOM05D000651 ORTHO05D001126 8.9e-07 57.4 42 57.1
Sabra08G0023200 Salix brachista HOM05D000651 ORTHO05D001126 8.9e-07 57.4 43 62.8
ECA238G4584 Erigeron canadensis HOM05D000651 ORTHO05D001126 1.2e-06 57.0 41 61.0
Lalb_Chr03g0036241 Lupinus albus HOM05D000651 ORTHO05D001126 1.2e-06 57.0 44 59.1
SGA_v2.0_scaffold62G21380 Striga asiatica HOM05D000651 ORTHO05D001126 1.2e-06 57.0 39 61.5
Lj2C21T6 Lonicera japonica HOM05D000651 ORTHO05D001126 1.5e-06 56.6 44 59.1
Oeu013847.1 Olea europaea HOM05D000651 ORTHO05D001126 1.5e-06 56.6 41 61.0
TAR623G0089 Trochodendron aralioides HOM05D000651 ORTHO05D001126 1.5e-06 56.6 39 61.5
Lalb_Chr02g0152051 Lupinus albus HOM05D000651 ORTHO05D001126 2.0e-06 56.2 41 56.1
Peaxi162Scf00145g01112 Petunia axillaris HOM05D000651 ORTHO05D001126 2.0e-06 56.2 46 58.7
PGR142G2749 Punica granatum HOM05D000651 ORTHO05D001126 2.0e-06 56.2 42 59.5
TWI15G0588 Tripterygium wilfordii HOM05D000651 ORTHO05D001126 2.0e-06 56.2 39 66.7
CsaV3_2G020870 Cucumis sativus L. HOM05D000651 ORTHO05D001126 2.6e-06 55.8 41 63.4
CsaV3_2G021150 Cucumis sativus L. HOM05D000651 ORTHO05D001126 2.6e-06 55.8 41 63.4
BraA03t12820Z Brassica rapa HOM05D000651 ORTHO05D001126 3.4e-06 55.5 40 60.0
CAN.G321.57 Capsicum annuum HOM05D000651 ORTHO05D001126 3.4e-06 55.5 39 64.1
Duzib114G0434 Durio zibethinus HOM05D000651 ORTHO05D001126 3.4e-06 55.5 40 57.5
ECA232G3057 Erigeron canadensis HOM05D000651 ORTHO05D001126 3.4e-06 55.5 39 59.0
Thecc.10G085200 Theobroma cacao HOM05D000651 ORTHO05D001126 3.4e-06 55.5 44 54.5
CARHR084900 Cardamine hirsuta HOM05D000651 ORTHO05D001126 4.4e-06 55.1 39 56.4
AUR62040621 Chenopodium quinoa HOM05D000651 ORTHO05D001126 4.4e-06 55.1 45 53.3
HanXRQChr12g0376901 Helianthus annuus HOM05D000651 ORTHO05D001126 4.4e-06 55.1 39 61.5
Nn2g13816 Nelumbo nucifera HOM05D000651 ORTHO05D001126 4.4e-06 55.1 39 59.0
Oeu027952.2 Olea europaea HOM05D000651 ORTHO05D001126 4.4e-06 55.1 39 53.8
Aqoxy2G01731 Aquilegia oxysepala HOM05D000651 ORTHO05D001126 5.8e-06 54.7 56 48.2
AT3G10410 Arabidopsis thaliana HOM05D000651 ORTHO05D001126 5.8e-06 54.7 51 45.1
arahy.Tifrunner.gnm1.ann1.9M9DE9 Arachis hypogaea HOM05D000651 ORTHO05D001126 5.8e-06 54.7 42 59.5
arahy.Tifrunner.gnm1.ann1.YAWL8X Arachis hypogaea HOM05D000651 ORTHO05D001126 5.8e-06 54.7 42 59.5
CSS0003298 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D001126 5.8e-06 54.7 45 57.8
Duzib106G0396 Durio zibethinus HOM05D000651 ORTHO05D001126 5.8e-06 54.7 39 56.4
TAR633G2081 Trochodendron aralioides HOM05D000651 ORTHO05D001126 5.8e-06 54.7 39 59.0
ATR0723G030 Amborella trichopoda HOM05D000651 ORTHO05D001126 7.6e-06 54.3 39 56.4
PSO339G2798 Papaver somniferum HOM05D000651 ORTHO05D001126 7.6e-06 54.3 45 55.6
Potri.008G034800 Populus trichocarpa HOM05D000651 ORTHO05D001126 7.6e-06 54.3 43 60.5
Sed0013730 Sechium edule HOM05D000651 ORTHO05D001126 7.6e-06 54.3 39 66.7
Aa31LG3G3020 Aethionema arabicum HOM05D000651 ORTHO05D001126 9.9e-06 53.9 42 50.0
FAN14G1905 Fragaria x ananassa HOM05D000651 ORTHO05D035305 9.9e-06 53.9 33 75.8


User provided reference genes

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