Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 1.6e-221 773.5 628 100.0
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.4e-179 632.9 625 85.9
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.3e-178 630.9 630 86.2
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 8.3e-178 628.2 630 86.0
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.9e-177 627.1 630 85.9
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 8.6e-175 618.2 628 79.9
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 7.1e-153 545.4 631 82.1
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 6.9e-148 528.9 592 83.4
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 1.5e-123 448.0 636 66.2
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 2.2e-117 427.6 622 63.8
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 3.1e-116 423.7 636 66.7
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 4.1e-116 423.3 633 64.6
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 3.4e-115 420.2 637 64.4
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 7.7e-115 419.1 627 64.4
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 7.7e-115 419.1 622 67.5
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 5.0e-114 416.4 643 69.8
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 5.0e-114 416.4 643 69.8
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.1e-113 415.2 622 64.5
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 1.6e-112 411.4 643 69.7
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 7.9e-112 409.1 642 63.7
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 5.7e-110 402.9 641 63.3
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 1.3e-109 401.7 450 60.7
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 4.8e-109 399.8 621 64.9
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 3.9e-103 380.2 632 68.0
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 1.7e-101 374.8 612 46.7
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 8.2e-101 372.5 642 61.1
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 1.1e-100 372.1 620 62.7
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.4e-100 370.9 654 59.8
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 5.3e-100 369.8 654 59.8
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 7.0e-100 369.4 659 58.9
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 2.6e-99 367.5 612 62.9
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 8.5e-98 362.5 648 58.0
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 2.5e-97 360.9 628 60.5
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 5.5e-97 359.8 613 61.2
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 2.7e-96 357.5 612 62.1
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 4.7e-96 356.7 625 67.2
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 2.3e-95 354.4 635 63.9
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 3.0e-95 354.0 625 46.9
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 2.6e-94 350.9 645 66.4
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 3.3e-94 350.5 535 73.8
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 7.5e-94 349.4 624 49.2
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 7.5e-94 349.4 625 45.3
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 1.7e-93 348.2 615 60.0
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 1.7e-93 348.2 630 60.6
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 2.2e-93 347.8 639 47.9
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 2.2e-93 347.8 625 45.6
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 1.1e-92 345.5 626 68.1
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 1.4e-92 345.1 648 58.6
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 3.1e-92 344.0 629 47.2
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 3.1e-92 344.0 622 68.3
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 2.6e-91 340.9 620 59.5
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 5.9e-91 339.7 651 57.9
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 2.9e-90 337.4 631 49.8
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 6.5e-90 336.3 627 43.4
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 4.2e-89 333.6 630 58.6
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 5.5e-89 333.2 648 57.4
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 2.7e-88 330.9 644 42.5
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 8.0e-88 329.3 629 40.4
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 1.8e-87 328.2 649 57.3
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 1.8e-87 328.2 631 56.9
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.8e-87 328.2 622 60.1
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 4.0e-87 327.0 636 57.2
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 6.8e-87 326.2 631 53.1
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 1.2e-86 325.5 650 57.5
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 1.2e-86 325.5 612 50.3
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 2.6e-86 324.3 620 59.2
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 2.2e-85 321.2 650 60.0
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 1.4e-84 318.5 620 57.7
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 1.4e-84 318.5 649 56.9
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.8e-84 318.2 641 65.1
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.5e-83 313.5 181 86.2
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 8.5e-82 309.3 636 55.7
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 1.9e-81 308.1 609 58.1
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 1.6e-80 305.1 632 56.6
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 4.7e-80 303.5 638 46.7
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.0e-79 302.4 654 55.5
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 1.4e-79 302.0 611 47.8
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 1.8e-79 301.6 638 48.9
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 2.6e-78 297.7 637 48.2
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 4.1e-76 290.4 458 57.0
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 3.5e-75 287.3 627 55.7
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 5.9e-75 286.6 424 75.2
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 6.1e-72 276.6 637 54.2
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 4.0e-71 273.9 626 36.9
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 5.2e-71 273.5 172 80.2
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 3.4e-70 270.8 447 70.7
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 5.7e-70 270.0 641 34.3
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 4.9e-69 266.9 621 55.4
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 4.3e-65 253.8 459 67.8
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 6.2e-64 250.0 422 71.6
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 1.0e-63 249.2 459 47.3
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 1.6e-59 235.3 181 64.6
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 3.5e-59 234.2 299 59.2
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 6.0e-59 233.4 183 59.6
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 5.0e-58 230.3 458 46.7
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 2.8e-56 224.6 631 40.1
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 7.5e-54 216.5 291 44.7
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 3.3e-49 201.1 267 44.2
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 2.6e-46 191.4 609 50.7
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 7.6e-46 189.9 341 78.3
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 4.1e-44 184.1 508 40.2
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.6e-43 182.2 161 54.7
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 6.0e-43 180.3 645 49.1
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 6.6e-42 176.8 176 50.0
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 1.1e-41 176.0 181 51.4
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 3.3e-41 174.5 180 51.7
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 4.3e-41 174.1 445 49.0
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 2.6e-38 164.9 183 45.9
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 1.2e-35 156.0 185 47.6
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 6.9e-31 140.2 114 60.5
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 6.9e-31 140.2 143 53.8
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 3.8e-29 134.4 77 87.0
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 1.9e-20 105.5 77 66.2
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 6.7e-18 97.1 100 49.0
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 1.9e-12 79.0 46 84.8
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 3.2e-12 78.2 101 49.5
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 1.0e-10 73.2 45 73.3
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 1.0e-10 73.2 226 27.0
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 1.1e-09 69.7 39 82.1
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 3.1e-07 61.6 198 27.8
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 3.1e-07 61.6 198 27.8
FAN03G2385 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.1e-07 61.2 57 63.2
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 4.5e-06 57.8 56 51.8
EL10Ac9g22193 Beta vulgaris HOM05D025815 ORTHO05D018419 7.6e-06 57.0 72 37.5


User provided reference genes

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