Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 4.8e-126 454.5 230 100.0
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 9.6e-119 430.3 230 94.8
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 9.6e-119 430.3 230 94.8
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 9.0e-117 423.7 236 92.4
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.1e-114 416.8 240 90.0
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 1.8e-112 409.5 229 89.1
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 5.7e-111 404.4 230 88.3
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 3.2e-106 388.7 243 85.2
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 3.1e-93 345.5 228 82.5
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.0e-79 299.7 223 69.5
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 4.8e-78 295.0 223 66.4
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 7.0e-77 291.2 223 65.5
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 9.1e-77 290.8 223 65.9
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 2.7e-76 289.3 221 67.4
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 2.9e-75 285.8 223 67.3
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 3.6e-73 278.9 223 65.5
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 4.0e-72 275.4 223 65.5
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 2.6e-71 272.7 223 64.1
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 5.7e-71 271.6 230 62.2
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 1.4e-69 266.9 224 62.9
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 4.1e-69 265.4 222 62.2
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 2.0e-68 263.1 223 61.9
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 1.1e-66 257.3 223 59.6
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 2.5e-66 256.1 202 68.3
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 3.3e-66 255.8 222 59.5
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 4.7e-65 251.9 220 57.7
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 5.2e-64 248.4 223 59.6
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 2.0e-63 246.5 224 59.8
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 4.4e-63 245.4 220 59.5
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 9.8e-63 244.2 223 58.3
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 3.7e-62 242.3 222 57.7
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 3.7e-62 242.3 222 56.8
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 3.7e-62 242.3 223 58.7
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 1.4e-61 240.4 222 56.8
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 1.4e-61 240.4 223 58.3
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 3.1e-61 239.2 223 57.4
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 9.2e-61 237.7 233 56.7
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 2.0e-60 236.5 235 56.6
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 2.7e-60 236.1 223 56.5
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 3.5e-60 235.7 222 54.1
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 3.9e-59 232.3 223 57.0
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 6.6e-59 231.5 222 55.4
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 5.6e-58 228.4 222 56.3
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 7.3e-58 228.0 229 54.1
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 7.3e-58 228.0 229 54.1
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 9.5e-58 227.6 223 52.9
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 9.5e-58 227.6 222 55.0
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 1.2e-57 227.3 222 55.9
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 1.2e-57 227.3 221 55.7
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 1.6e-57 226.9 222 55.9
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 4.7e-57 225.3 219 56.6
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 6.1e-57 224.9 223 55.2
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 6.1e-57 224.9 223 55.2
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 1.0e-56 224.2 222 55.0
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 1.0e-56 224.2 224 56.2
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 1.8e-56 223.4 222 55.4
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 1.8e-56 223.4 222 54.1
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 3.1e-56 222.6 220 55.9
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 6.8e-56 221.5 223 55.2
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 8.9e-56 221.1 224 55.4
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 2.0e-55 219.9 222 51.8
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 2.6e-55 219.5 222 53.6
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 3.4e-55 219.2 224 55.4
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 5.8e-55 218.4 223 54.7
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 1.3e-54 217.2 223 54.3
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 1.7e-54 216.9 222 53.2
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 1.7e-54 216.9 197 59.9
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 1.7e-54 216.9 222 53.6
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 1.7e-54 216.9 220 55.9
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 2.2e-54 216.5 223 53.4
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 2.9e-54 216.1 202 61.9
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 3.7e-54 215.7 223 53.4
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 4.9e-54 215.3 235 52.8
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 4.9e-54 215.3 172 64.0
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 6.4e-54 214.9 217 52.1
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 1.9e-53 213.4 228 52.2
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 3.9e-51 205.7 253 49.0
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 1.1e-50 204.1 252 49.2
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 1.9e-50 203.4 235 51.5
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 1.9e-50 203.4 223 48.0
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 7.3e-50 201.4 179 61.5
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 9.5e-50 201.1 143 65.7
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 1.2e-49 200.7 221 48.4
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 6.8e-48 194.9 221 47.1
MD07G1162500 Malus domestica HOM05D006082 ORTHO05D007616 8.9e-48 194.5 148 68.2
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 1.2e-47 194.1 193 56.0
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 2.2e-46 189.9 217 47.9
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 6.4e-46 188.3 198 50.0
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 4.1e-45 185.7 220 49.1
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 2.1e-44 183.3 218 50.0
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 3.5e-44 182.6 198 53.0
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 3.5e-44 182.6 219 46.6
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 2.3e-43 179.9 229 47.6
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 2.1e-41 173.3 305 40.3
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 2.9e-38 162.9 195 50.3
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 2.1e-36 156.8 251 42.6
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 1.3e-35 154.1 223 44.4
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 1.3e-35 154.1 201 44.3
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.3e-35 153.3 132 65.2
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 8.6e-35 151.4 167 48.5
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 9.5e-34 147.9 195 43.1
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 2.8e-33 146.4 179 48.0
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 8.1e-33 144.8 306 35.0
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 2.0e-31 140.2 203 42.9
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 3.2e-29 132.9 298 34.2
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 4.6e-28 129.0 279 36.2
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 3.9e-27 125.9 140 45.7
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 1.5e-26 124.0 88 60.2
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 1.9e-26 123.6 219 38.4
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 1.9e-26 123.6 222 36.0
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 2.5e-26 123.2 213 38.0
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 3.3e-26 122.9 123 59.3
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 8.1e-25 118.2 233 32.6
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 1.8e-24 117.1 220 34.1
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 3.1e-24 116.3 75 66.7
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 1.5e-23 114.0 73 67.1
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 2.9e-22 109.8 65 87.7
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 9.3e-21 104.8 244 32.4
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 1.0e-19 101.3 120 52.5
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 3.0e-19 99.8 195 39.0
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 8.7e-19 98.2 73 76.7
RcHm_v2.0_Chr1g0361671 Rosa chinensis HOM05D006082 ORTHO05D007616 8.1e-17 91.7 114 53.5
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 7.6e-15 85.1 106 50.0
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 2.9e-14 83.2 196 31.6
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 1.2e-12 77.8 167 34.7
RcHm_v2.0_Chr1g0361451 Rosa chinensis HOM05D006082 ORTHO05D007616 1.6e-12 77.4 51 80.4
RcHm_v2.0_Chr1g0333691 Rosa chinensis HOM05D006082 ORTHO05D007616 2.1e-09 67.0 34 94.1
BcaC05g24595 Brassica carinata HOM05D006082 ORTHO05D007616 6.4e-06 55.5 80 47.5


User provided reference genes

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