Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 2155.6 1072 100.0
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 2010.7 1082 92.7
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1954.1 1061 92.1
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1953.3 1071 91.5
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1949.9 1068 91.6
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1942.5 1072 91.0
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1940.2 1072 91.0
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1937.9 1072 90.8
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1829.3 1086 83.8
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1702.2 1088 78.8
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1682.2 1090 76.8
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1681.4 1075 77.6
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1666.7 1085 76.4
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1664.4 1068 77.0
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1661.7 1068 77.2
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1660.2 1107 75.2
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1648.6 1087 76.2
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1648.6 1079 76.6
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1642.9 1091 75.3
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1637.1 1065 76.2
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1630.9 1086 75.5
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1622.8 1099 74.4
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1616.3 1076 74.3
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1610.5 1068 74.7
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1610.5 1065 74.7
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1608.6 1074 74.6
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1600.5 1087 74.2
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1600.5 1075 74.1
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1598.6 1086 73.9
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1595.1 1077 74.3
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1590.9 1068 74.3
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1590.5 1063 74.7
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1589.3 1063 74.6
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1583.2 1078 74.2
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1582.4 1068 73.1
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1581.6 1089 73.7
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1579.3 1068 72.8
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1578.5 1069 74.5
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1577.8 1068 73.1
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1573.1 1106 72.7
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1572.4 1065 73.1
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1566.6 1085 72.5
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1563.9 1073 72.7
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1552.0 1074 72.0
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1550.4 1083 71.7
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1549.3 1060 72.5
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1549.3 1077 72.0
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1548.9 1080 71.7
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1547.7 1066 72.4
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1546.2 1067 72.1
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1545.0 1069 72.6
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1542.3 1073 71.5
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1540.4 1068 71.2
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1540.4 1070 71.9
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1540.0 1068 71.6
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1540.0 1078 70.8
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1539.6 1071 71.1
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1539.2 1071 71.9
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1537.3 1067 71.6
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1534.2 1070 71.3
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1531.5 1068 71.8
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1531.2 1068 72.3
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1528.8 1074 71.3
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1527.3 1082 70.1
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1526.1 1071 71.3
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1515.4 1076 70.4
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1514.6 1077 70.5
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1513.8 1078 70.5
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1504.6 1074 69.7
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1500.3 1073 69.9
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1500.3 1062 70.8
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1498.4 1075 69.7
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1496.5 1077 71.2
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1495.3 1078 70.2
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1493.0 1206 65.5
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1492.6 1076 70.9
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1489.2 981 75.5
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1486.9 1067 70.1
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1481.8 1066 70.0
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1481.5 1083 68.4
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1469.5 1069 70.1
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1447.6 1075 69.3
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1409.0 1084 66.1
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1402.5 946 72.7
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1397.1 1084 65.6
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1393.6 1130 63.5
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1382.5 1076 66.1
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1368.6 1076 63.7
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1346.6 948 70.9
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1344.3 1079 61.8
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1325.8 758 85.9
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1270.4 1198 55.8
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1216.4 1063 58.0
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1206.0 759 78.7
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1183.7 964 64.5
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1182.9 1074 60.1
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1082.4 754 70.8
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.5e-307 1059.7 718 73.5
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 3.3e-286 988.8 1072 49.7
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.4e-273 946.8 1016 54.0
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 5.4e-273 944.9 1071 48.5
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 9.3e-249 864.4 605 70.6
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.5e-235 820.5 713 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 2.6e-227 793.1 1009 44.6
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 1.0e-226 791.2 539 73.7
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 3.5e-203 713.0 497 70.4
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 4.2e-201 706.1 656 58.4
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 2.4e-188 663.7 1509 32.2
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 2.5e-169 600.5 403 75.4
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.5e-134 485.0 329 76.0
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 7.2e-84 316.6 194 78.4
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 4.7e-67 260.8 163 79.8
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 2.4e-39 168.7 104 80.8
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.4e-23 116.3 59 86.4
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 7.4e-20 104.0 54 85.2
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 7.1e-15 87.4 65 61.5
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 1.4e-10 73.2 208 27.4
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.8e-10 72.8 49 65.3
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.8e-10 72.8 49 65.3
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.0e-09 69.3 89 42.7
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 4.5e-09 68.2 73 49.3
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 7.6e-09 67.4 73 49.3
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.9e-08 65.5 40 72.5
GSVIVG01037616001 Vitis vinifera HOM05D006425 ORTHO05D007312 2.7e-06 58.9 79 39.2


User provided reference genes

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