Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 3.3e-122 441.8 235 100.0
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.9e-109 399.4 235 92.3
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.2e-109 398.7 235 91.9
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 4.1e-109 398.3 235 91.9
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.7e-108 395.6 235 91.5
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.5e-108 395.2 234 91.0
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.3e-106 388.3 230 91.7
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 4.9e-94 348.2 235 80.9
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 1.3e-91 340.1 235 79.6
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 6.0e-84 314.7 231 74.0
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 7.9e-84 314.3 234 75.2
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 1.3e-83 313.5 235 71.1
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 3.9e-83 312.0 235 72.3
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 9.0e-80 300.8 234 70.9
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 5.8e-79 298.1 234 69.2
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.1e-77 293.9 235 69.4
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.1e-77 293.9 235 68.9
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.4e-77 293.5 235 69.8
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.9e-77 293.1 254 65.4
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 2.5e-77 292.7 230 69.6
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 5.5e-77 291.6 254 65.0
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 5.5e-77 291.6 235 67.2
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.6e-76 290.0 234 68.4
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 3.5e-76 288.9 236 67.4
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 6.0e-76 288.1 255 65.1
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 6.0e-76 288.1 255 65.5
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 7.9e-76 287.7 254 64.2
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 3.0e-75 285.8 233 66.1
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.0e-75 285.8 236 65.7
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 8.7e-75 284.3 255 63.1
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.1e-74 283.9 251 64.1
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 7.4e-74 281.2 255 61.6
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 1.6e-73 280.0 238 66.0
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.6e-73 280.0 230 67.8
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 1.6e-73 280.0 214 72.9
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 2.1e-73 279.6 232 66.8
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 2.1e-73 279.6 235 66.4
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 3.7e-73 278.9 231 66.2
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 8.2e-73 277.7 235 66.0
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 1.8e-72 276.6 215 69.3
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 3.1e-72 275.8 231 66.7
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 5.3e-72 275.0 236 65.7
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 1.2e-71 273.9 230 66.1
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 1.3e-70 270.4 235 65.5
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 2.9e-70 269.2 238 66.0
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.9e-69 266.5 239 63.2
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 3.2e-69 265.8 238 65.1
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 3.2e-69 265.8 240 64.2
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 4.2e-69 265.4 244 63.9
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 5.5e-69 265.0 235 61.7
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 7.2e-69 264.6 235 65.5
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 7.2e-69 264.6 231 65.8
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 9.3e-69 264.2 235 63.8
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 9.3e-69 264.2 231 64.9
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 1.6e-68 263.5 240 64.2
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 1.6e-68 263.5 235 65.5
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 1.6e-68 263.5 225 66.7
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 2.1e-68 263.1 240 64.2
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 2.1e-68 263.1 239 64.0
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 2.1e-68 263.1 225 66.7
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 2.7e-68 262.7 244 63.9
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 4.6e-68 261.9 239 63.6
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 6.1e-68 261.5 238 63.9
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.0e-67 260.8 235 63.0
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.3e-67 260.4 251 61.4
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 2.3e-67 259.6 238 63.9
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 3.9e-67 258.8 251 61.4
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 6.7e-67 258.1 264 58.7
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 8.7e-67 257.7 256 59.4
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 2.5e-66 256.1 237 61.6
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 2.5e-66 256.1 237 61.6
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 5.7e-66 255.0 218 66.5
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 1.6e-65 253.4 223 64.1
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 4.8e-65 251.9 202 67.8
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 6.3e-65 251.5 219 65.8
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 1.1e-64 250.8 237 59.1
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 3.1e-64 249.2 264 56.4
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 4.1e-64 248.8 238 63.4
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 5.3e-64 248.4 234 61.5
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 9.0e-64 247.7 202 67.3
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.2e-63 247.3 208 66.8
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.5e-63 246.9 234 59.4
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 1.3e-62 243.8 181 74.0
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.7e-62 243.4 199 67.8
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.4e-61 240.4 199 65.8
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 1.9e-61 240.0 232 59.5
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 5.5e-61 238.4 228 59.2
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 5.5e-61 238.4 204 62.3
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 3.9e-59 232.3 229 61.6
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 5.1e-59 231.9 201 62.7
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.1e-58 230.7 201 60.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 4.3e-58 228.8 177 68.9
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.2e-55 220.7 202 59.4
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.2e-53 212.2 153 69.9
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.0e-51 207.6 196 60.2
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.9e-51 205.7 235 51.9
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 1.3e-49 200.7 240 51.2
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 1.8e-48 196.8 193 57.5
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.3e-46 190.7 235 48.9
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 4.0e-43 179.1 212 51.9
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 2.0e-42 176.8 163 62.6
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 1.1e-40 171.0 156 58.3
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 1.3e-38 164.1 215 48.4
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.1e-37 161.0 235 47.2
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 2.7e-36 156.4 191 48.7
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 6.1e-36 155.2 154 53.2
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.0e-34 150.2 221 44.3
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 8.3e-33 144.8 155 49.0
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 3.5e-31 139.4 112 64.3
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 5.0e-22 109.0 111 59.5
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 6.6e-22 108.6 156 44.2
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 1.1e-21 107.8 139 46.8
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 7.3e-21 105.1 103 56.3
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.3e-17 94.4 146 37.7
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 1.3e-14 84.3 218 32.1
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 1.7e-06 57.4 35 74.3
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 3.0e-06 56.6 64 56.2
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 3.0e-06 56.6 64 56.2
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 3.9e-06 56.2 64 56.2
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 6.6e-06 55.5 64 53.1


User provided reference genes

Program Settings