Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0359771 Rosa chinensis HOM05D000235 ORTHO05D012707 6.9e-40 166.8 80 100.0
RcHm_v2.0_Chr1g0359711 Rosa chinensis HOM05D000235 ORTHO05D000147 6.9e-24 113.6 56 98.2
RcHm_v2.0_Chr1g0359671 Rosa chinensis HOM05D000235 ORTHO05D000147 3.6e-20 101.3 56 85.7
FAN01G2066 Fragaria x ananassa HOM05D000235 ORTHO05D000147 5.7e-18 94.0 57 87.7
FAN10G3759 Fragaria x ananassa HOM05D000235 ORTHO05D000147 5.7e-18 94.0 57 87.7
RcHm_v2.0_Chr1g0359661 Rosa chinensis HOM05D000235 ORTHO05D000147 2.2e-17 92.0 56 83.9
FvH4_7g22810 Fragaria vesca HOM05D000235 ORTHO05D000147 1.6e-15 85.9 57 77.2
FAN06G3903 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.6e-15 85.9 57 77.2
FAN03G0321 Fragaria x ananassa HOM05D000235 ORTHO05D000147 2.2e-14 82.0 57 73.7
FAN06G1221 Fragaria x ananassa HOM05D000235 ORTHO05D000147 5.0e-14 80.9 56 73.2
FAN03G2719 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.9e-13 79.0 58 72.4
FAN01G2281 Fragaria x ananassa HOM05D000235 ORTHO05D000147 2.5e-13 78.6 57 70.2
FvH4_7g22620 Fragaria vesca HOM05D000235 ORTHO05D000147 7.2e-13 77.0 60 73.3
FAN01G1474 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.2e-12 76.3 60 73.3
FAN01G2996 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.2e-12 76.3 60 73.3
FAN03G1571 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.2e-12 76.3 60 73.3
FAN06G2671 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.2e-12 76.3 60 73.3
FAN06G3418 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.2e-12 76.3 60 73.3
FAN10G1286 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.2e-12 76.3 60 73.3
FvH4_7g16520 Fragaria vesca HOM05D000235 ORTHO05D000147 6.1e-12 73.9 57 70.2
FAN06G2990 Fragaria x ananassa HOM05D000235 ORTHO05D000147 6.1e-12 73.9 57 70.2
FAN03G1925 Fragaria x ananassa HOM05D000235 ORTHO05D000147 8.0e-12 73.6 61 72.1
RcHm_v2.0_Chr6g0300161 Rosa chinensis HOM05D000235 ORTHO05D000147 6.3e-09 63.9 55 69.1
CSS0035315 Camellia sinensis var. sinensis HOM05D000235 ORTHO05D000147 5.3e-08 60.8 51 60.8
FvH4_2g40550 Fragaria vesca HOM05D000235 ORTHO05D000147 3.5e-07 58.2 57 63.2
FAN15G1794 Fragaria x ananassa HOM05D000235 ORTHO05D000147 5.9e-07 57.4 57 61.4
FAN20G1455 Fragaria x ananassa HOM05D000235 ORTHO05D000147 5.9e-07 57.4 58 60.3
Manes.05G167466 Manihot esculenta HOM05D000235 ORTHO05D000147 5.9e-07 57.4 52 55.8
RcHm_v2.0_Chr7g0233631 Rosa chinensis HOM05D000235 ORTHO05D000147 5.9e-07 57.4 51 56.9
FAN01G1021 Fragaria x ananassa HOM05D000235 ORTHO05D000147 7.7e-07 57.0 30 86.7
FAN01G1674 Fragaria x ananassa HOM05D000235 ORTHO05D000147 7.7e-07 57.0 30 86.7
TWI12G1246 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 7.7e-07 57.0 54 55.6
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.0e-06 56.6 50 48.0
PGSC0003DMG400003340 Solanum tuberosum HOM05D000235 ORTHO05D000147 1.0e-06 56.6 54 50.0
Sabra14G0027400 Salix brachista HOM05D000235 ORTHO05D000147 1.3e-06 56.2 46 58.7
Ciclev10003803m.g Citrus clementina HOM05D000235 ORTHO05D000147 1.7e-06 55.8 55 45.5
Prupe.6G212300 Prunus persica HOM05D000235 ORTHO05D000147 2.2e-06 55.5 55 54.5
TWI12G0402 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 2.2e-06 55.5 55 56.4
Cfa005449 Carpinus fangiana HOM05D000235 ORTHO05D000147 2.9e-06 55.1 45 64.4
FvH4_2g40570 Fragaria vesca HOM05D000235 ORTHO05D000147 2.9e-06 55.1 45 60.0
PSO675G6871 Papaver somniferum HOM05D000235 ORTHO05D000147 2.9e-06 55.1 57 50.9
Sabra14G0027500 Salix brachista HOM05D000235 ORTHO05D000147 2.9e-06 55.1 53 54.7
vmacro21585 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 2.9e-06 55.1 51 54.9
Cfa008891 Carpinus fangiana HOM05D000235 ORTHO05D000147 3.8e-06 54.7 50 50.0
Potri.014G037600 Populus trichocarpa HOM05D000235 ORTHO05D000147 3.8e-06 54.7 46 58.7
TWI56G0637 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 3.8e-06 54.7 48 58.3
TWI56G0940 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 3.8e-06 54.7 51 56.9
Cfa018477 Carpinus fangiana HOM05D000235 ORTHO05D000147 5.0e-06 54.3 54 57.4
Manes.05G168100 Manihot esculenta HOM05D000235 ORTHO05D000147 5.0e-06 54.3 52 51.9
Manes.18G027595 Manihot esculenta HOM05D000235 ORTHO05D000147 5.0e-06 54.3 52 53.8
PGSC0003DMG400003341 Solanum tuberosum HOM05D000235 ORTHO05D000147 5.0e-06 54.3 54 48.1
TWI23G0715 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 5.0e-06 54.3 52 50.0
Haze_17596 Corylus avellana HOM05D000235 ORTHO05D000147 6.5e-06 53.9 45 62.2
FAN27G2184 Fragaria x ananassa HOM05D000235 ORTHO05D000147 6.5e-06 53.9 45 57.8
Lj4A48G70 Lonicera japonica HOM05D000235 ORTHO05D000147 6.5e-06 53.9 54 51.9
Sabra14G0027100 Salix brachista HOM05D000235 ORTHO05D000147 6.5e-06 53.9 46 56.5
Sabra14G0027300 Salix brachista HOM05D000235 ORTHO05D000147 6.5e-06 53.9 53 52.8
TWI56G0356 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 6.5e-06 53.9 52 55.8
TWI56G1166 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 6.5e-06 53.9 54 51.9
GSVIVG01009608001 Vitis vinifera HOM05D000235 ORTHO05D000147 6.5e-06 53.9 51 52.9
arahy.Tifrunner.gnm1.ann1.056HEM Arachis hypogaea HOM05D000235 ORTHO05D000147 8.5e-06 53.5 45 60.0
Dinv39361 Davidia involucrata HOM05D000235 ORTHO05D000147 8.5e-06 53.5 55 49.1
Eucgr.B02554 Eucalyptus grandis HOM05D000235 ORTHO05D000147 8.5e-06 53.5 57 50.9
Lj3g0006597 Lotus japonicus HOM05D000235 ORTHO05D000147 8.5e-06 53.5 45 55.6
Manes.05G167000 Manihot esculenta HOM05D000235 ORTHO05D000147 8.5e-06 53.5 54 50.0
Phvul.010G022700 Phaseolus vulgaris HOM05D000235 ORTHO05D000147 8.5e-06 53.5 54 53.7
QL12p001176 Quercus lobata HOM05D000235 ORTHO05D000147 8.5e-06 53.5 45 64.4
QL12p001182 Quercus lobata HOM05D000235 ORTHO05D000147 8.5e-06 53.5 45 64.4
Thecc.08G018700 Theobroma cacao HOM05D000235 ORTHO05D000147 8.5e-06 53.5 46 63.0
Thecc.08G018800 Theobroma cacao HOM05D000235 ORTHO05D000147 8.5e-06 53.5 46 63.0
TWI56G0561 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 8.5e-06 53.5 48 56.2
TAR629G1067 Trochodendron aralioides HOM05D000235 ORTHO05D000147 8.5e-06 53.5 52 50.0


User provided reference genes

Program Settings