Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 9.1e-153 543.5 267 100.0
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 2.1e-149 532.3 267 98.5
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 4.2e-134 481.5 265 89.8
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.1e-133 479.2 256 91.8
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.8e-132 476.1 256 91.4
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 3.6e-125 451.8 272 84.6
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 1.8e-124 449.5 271 83.4
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 1.0e-119 433.7 278 82.7
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 4.2e-118 428.3 278 81.7
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 9.2e-113 410.6 218 92.7
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 4.9e-106 388.3 286 72.7
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 1.4e-100 370.2 275 70.5
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 3.4e-99 365.5 288 69.1
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 5.8e-99 364.8 286 68.5
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 7.5e-99 364.4 301 65.4
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 1.7e-98 363.2 220 81.4
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 1.4e-97 360.1 222 81.5
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 1.9e-97 359.8 268 69.0
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 1.9e-97 359.8 214 82.7
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 4.1e-97 358.6 203 86.2
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 9.2e-97 357.5 289 66.4
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 1.2e-96 357.1 288 67.4
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 1.6e-96 356.7 289 65.7
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 2.7e-96 355.9 201 85.1
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 2.7e-96 355.9 285 66.3
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 3.5e-96 355.5 195 89.7
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 3.5e-96 355.5 285 65.6
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 3.5e-96 355.5 277 67.9
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 3.5e-96 355.5 274 71.5
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 3.5e-96 355.5 271 71.6
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 4.6e-96 355.1 242 76.9
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 4.6e-96 355.1 240 75.0
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 7.8e-96 354.4 253 73.5
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 1.3e-95 353.6 236 75.0
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 1.7e-95 353.2 274 71.5
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 3.9e-95 352.1 286 66.4
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 3.9e-95 352.1 286 66.4
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 5.1e-95 351.7 209 82.8
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 6.6e-95 351.3 271 69.0
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 8.6e-95 350.9 199 86.9
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 8.6e-95 350.9 283 65.7
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 1.1e-94 350.5 273 67.0
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 1.5e-94 350.1 258 69.8
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 1.9e-94 349.7 285 65.6
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 2.5e-94 349.4 285 64.9
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 3.3e-94 349.0 286 66.4
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 4.3e-94 348.6 244 71.7
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 5.6e-94 348.2 250 73.2
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 5.6e-94 348.2 287 67.6
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 5.6e-94 348.2 200 85.5
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 5.6e-94 348.2 195 85.6
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 9.5e-94 347.4 191 87.4
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.2e-93 347.1 287 65.5
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 1.2e-93 347.1 280 66.4
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 2.8e-93 345.9 205 81.5
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 2.8e-93 345.9 213 80.3
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 2.8e-93 345.9 213 80.3
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 2.8e-93 345.9 212 79.2
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 2.8e-93 345.9 197 85.8
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 3.6e-93 345.5 270 66.3
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 3.6e-93 345.5 253 70.8
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 3.6e-93 345.5 285 64.6
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 4.7e-93 345.1 213 80.3
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 6.2e-93 344.7 312 63.1
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 6.2e-93 344.7 205 81.5
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 6.2e-93 344.7 212 79.7
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 8.1e-93 344.4 186 88.7
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 8.1e-93 344.4 212 80.7
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 8.1e-93 344.4 250 70.8
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 1.1e-92 344.0 213 79.8
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 1.1e-92 344.0 285 64.2
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 1.8e-92 343.2 274 66.8
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 2.3e-92 342.8 273 68.1
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 3.1e-92 342.4 190 85.8
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 3.1e-92 342.4 189 86.8
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 3.1e-92 342.4 250 71.6
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 6.8e-92 341.3 281 67.6
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 1.2e-91 340.5 205 80.5
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 2.6e-91 339.3 205 79.5
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 4.4e-91 338.6 254 70.1
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 5.8e-91 338.2 242 70.2
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 9.9e-91 337.4 284 64.1
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 3.7e-90 335.5 190 84.2
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 1.1e-89 334.0 187 85.0
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 1.4e-89 333.6 191 84.8
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 1.9e-89 333.2 191 84.8
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 1.9e-89 333.2 191 84.8
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 2.4e-89 332.8 190 83.2
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 4.1e-89 332.0 191 83.2
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 7.1e-89 331.3 285 62.5
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 2.1e-88 329.7 190 85.3
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 2.7e-88 329.3 190 82.1
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 4.6e-88 328.6 268 65.7
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 3.0e-87 325.9 239 71.5
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 3.9e-87 325.5 339 55.5
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 3.9e-87 325.5 190 83.2
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 3.9e-87 325.5 190 83.2
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 3.9e-87 325.5 187 82.4
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 8.6e-87 324.3 244 71.3
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 5.6e-86 321.6 167 92.8
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 7.3e-86 321.2 181 83.4
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 9.6e-86 320.9 256 64.1
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 1.6e-85 320.1 183 83.1
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 2.1e-85 319.7 194 82.0
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 2.8e-85 319.3 194 82.5
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 6.2e-85 318.2 194 79.4
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 6.2e-85 318.2 195 79.0
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 4.0e-84 315.5 195 78.5
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 2.0e-83 313.2 307 56.7
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 5.8e-83 311.6 194 76.8
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 3.8e-82 308.9 190 77.9
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 8.4e-82 307.8 191 80.1
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 9.3e-81 304.3 249 65.5
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 3.5e-80 302.4 188 80.3
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 1.7e-79 300.1 249 62.7
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 3.9e-79 298.9 155 93.5
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.1e-78 297.4 149 98.0
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 1.3e-77 293.9 254 63.8
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 2.4e-76 289.7 177 79.7
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 9.0e-76 287.7 152 90.1
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 1.5e-75 287.0 272 59.6
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 2.6e-75 286.2 180 74.4
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 1.3e-71 273.9 182 69.8
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 2.3e-71 273.1 364 46.2
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 3.0e-71 272.7 192 72.9
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 7.3e-70 268.1 226 66.4
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 4.9e-66 255.4 168 72.6
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 3.2e-65 252.7 226 63.7
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 1.2e-64 250.8 189 63.0
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 6.0e-64 248.4 224 60.3
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 8.7e-63 244.6 178 69.1
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 1.4e-60 237.3 195 65.6
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 1.7e-58 230.3 141 83.0
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 2.1e-56 223.4 137 81.8
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 1.8e-55 220.3 175 57.7
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 4.3e-54 215.7 194 56.7
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 7.4e-54 214.9 137 75.9
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 2.4e-44 183.3 199 45.7
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 9.0e-44 181.4 186 50.0
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 4.2e-41 172.6 159 60.4
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 4.3e-38 162.5 180 43.9
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 6.3e-37 158.7 94 80.9
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 2.4e-36 156.8 103 77.7
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 2.4e-36 156.8 103 77.7
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 4.1e-36 156.0 146 54.8
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 1.3e-34 151.0 145 55.9
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 4.7e-32 142.5 100 76.0
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 6.1e-32 142.1 77 89.6
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 1.8e-31 140.6 179 49.7
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 6.3e-29 132.1 97 71.1
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 2.4e-28 130.2 100 62.0
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 4.5e-27 125.9 92 76.1
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 3.2e-25 119.8 107 58.9
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 4.7e-24 115.9 91 65.9
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 2.0e-22 110.5 164 42.7
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 2.8e-21 106.7 70 74.3
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 1.1e-20 104.8 95 62.1
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 3.1e-20 103.2 107 55.1
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 5.9e-19 99.0 67 68.7
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 1.3e-18 97.8 85 61.2
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 3.8e-18 96.3 83 59.0
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 2.1e-16 90.5 48 89.6
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 6.1e-16 89.0 66 63.6
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 5.2e-15 85.9 50 80.0
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 5.2e-15 85.9 50 80.0
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 8.8e-15 85.1 62 69.4
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 1.4e-12 77.8 53 67.9
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 3.5e-11 73.2 105 42.9
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 1.0e-10 71.6 63 61.9
Oeu009434.1 Olea europaea HOM05D004144 ORTHO05D004902 3.8e-10 69.7 36 91.7


User provided reference genes

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